Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0750 ATGCCAAGCTCTAGATCAGCAGCCTCTGAGAACAAAACCCAGATGATGATGGGTTTGTCTCTTCAAACCAACCAATCTTGTTTTGGTGAGAGAAGAGGAAGAAGAAAGCAAGGAGAAGCAGGCAGGTTTCTTGGAGTAAGAAGAAGACCTTGGGGAAGATATGCTGCAGAAATTAGAGACCCCACAACTAAAGAAAGACATTGGCTTGGCACTTTTGATACTTCTCAAGAAGCTGCTTTAGCTTATGACAGAGCTGCTTTGTCCATCAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACACTGACATCAATAATACAAGCTTTGACAATGCTCTTCTTTGTCCCTTTGATGTTCAGCTTCATCAGTCACTCTTTAACACTGCTCAGATGAAACAGTCAACCAATCAGAACAGCTCACCACATCAGCTTTCTTCTGAGAATTCCCAGGTTAAGATTACTGCTGCATGTGATAATAACAACTTCTTCAACAATGATGATTCTAAATCAGGTTACTTGGAATGCATCGTTCCCGATGTATGTTTCAGACCTTCTTCTTCTTCTTCTTCCAATGATAGCAAAAGTGACCAGAAGATATCTCAAGAAGCTGTGAAGAAGAACATGGCCTCATCAAGCTCTGGAGATTTCATTTATCCAATAAATGAACTTATTGGTCAAGAAACAATCTGGGATTGGGGCTGCAGTGAACTTGCTGCTATATTCAACAGTCCATTAAAGGTTGAAGAAACTTCATCAACCACTTATGCTCCATCACTTCCTTCATTTGATGTTGATTTGGCTTACACACTCTTCTGA 813 0.4047 MPSSRSAASENKTQMMMGLSLQTNQSCFGERRGRRKQGEAGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTSQEAALAYDRAALSIKGSQARTNFVYTDINNTSFDNALLCPFDVQLHQSLFNTAQMKQSTNQNSSPHQLSSENSQVKITAACDNNNFFNNDDSKSGYLECIVPDVCFRPSSSSSSNDSKSDQKISQEAVKKNMASSSSGDFIYPINELIGQETIWDWGCSELAAIFNSPLKVEETSSTTYAPSLPSFDVDLAYTLF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0750 270 CDD AP2 42 98 IPR001471 GO:0003700|GO:0006355
Lele22g0750 270 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lele22g0750 270 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Lele22g0750 270 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lele22g0750 270 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677
Lele22g0750 270 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lele22g0750 270 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lele22g0750 270 Pfam AP2 domain 45 91 IPR001471 GO:0003700|GO:0006355
Lele22g0750 270 FunFam Ethylene-responsive transcription factor 2 42 100 - -
Lele22g0750 270 MobiDBLite consensus disorder prediction 183 205 - -
Lele22g0750 270 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0750 Lele-ChrLele22 4909852 4910664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0750 29 215 AP2-EREBP Transcription Factor Family AT5G18560 41.004 4.08e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele22g0750 AP2 2.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0750 22 4909852 4910664 Lele23g1279 23 18085694 18086575 hybridization
Lele22g0750 22 4909852 4910664 Lele24g0737 24 4940993 4941802 hybridization