Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0740 ATGGTGGATAACCTGGGAGGAGGAAGTTCCTCATCATCATCAATCAATGTTGTTGACAAAATGATGGTAAAGGAACAAGAAAGGTTGTTGCCAATAGCGAATGTTGGTCGGATTATGAAGCAAATCTTGCCGCAGAACGCGAAGATCTCGAAGGAATCGAAGGAGACGATGCAGGAATGCGTGTCGGAGTTCATAAGCTTCGTCACCAGCGAGGCCTCCGATAAGTGCAGAAAAGAAAGAAGGAAAACCGTTAATGGCGACGACATATGCTGGGCCCTGAAAACCCTAGGGTTCGATGATTACGCAGAGCCACTTAAAAGGTACTTGCATAGATATAGAGAGCTTGAGGTAGATCAACGACCTAATAATTCTGATCACCATCATCATCATCATCAAGATACAGAATTAGGACCTTGA 417 0.4436 MVDNLGGGSSSSSSINVVDKMMVKEQERLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALKTLGFDDYAEPLKRYLHRYRELEVDQRPNNSDHHHHHHQDTELGP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0740 138 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Lele22g0740 138 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Lele22g0740 138 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Lele22g0740 138 SUPERFAMILY Histone-fold 26 130 IPR009072 GO:0046982
Lele22g0740 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Lele22g0740 138 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele22g0740 138 FunFam Nuclear transcription factor Y subunit B-3 18 137 - -
Lele22g0740 138 Gene3D Histone, subunit A 17 137 IPR009072 GO:0046982
Lele22g0740 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0740 Lele-ChrLele22 4845227 4845643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0740 19 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.808 4.67e-59 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele22g0740 CBFD_NFYB_HMF 9e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0740 22 4845227 4845643 Lele24g0730 24 4876168 4876578 hybridization