Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0670 ATGAATCTGAGCAACGCCAAGGGATCCATGTCAACGGCCAGCTCTAGTACCGCTCGGAAATCCGGTGACGGCGCCGGTGCCGTCGACCAGTTCCCGGCGGGCTTGCGGGTACTGGTGGTCGACGATGATCCCACTTGCCTTATGATCCTTGAGAAGATGCTTCGCACTTGCCTCTACGAAGTAACAAAATGCAATCGAGCTGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTCATAAGCGATGTGCATATGCCAGACATGGATGGCTTCAAGCTTTTAGAACACATAGGGTTGGAAATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGGAAAAATGTTGTTATGAAAGGTGTAACACATGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATCGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAGAAAGAACGAGTGGAAGGATTTGGAGCAATCCTATAGCACAGAAGAAGGAGATCGGCAGCAAAAGGCATCGGATGAAGCTGATTACTCATCGTCAGCAAATGAAGGAAATTGGAGAAATGCTAAGAAGAAGAGAGATGAGGAGGAAGAAGCAGAGGAGAAGGATGATACTTCTACATTAAAGAAGCCGCGCGTTGTTTGGTCCGTTGAGCTCCACCAACAGTTTGTGGCTGCCGTGAATCAGTTGGGAATTGACAAGGCCGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTTACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGTCTGTATCTAAGAAGACTCAGTGGCGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGAACAATGTCAGCATTTAATGGAATCGATCTTCAAGCTCTTGCAGCTTCCGGCCAGCTTCCGGCACAAAGTCTGGCAGCGCTTCAAGCAGCAGGACTTGGTAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTGTCGATGAAAGGAACCTTTTCAGTTTTGAAAACCCCAGATTAAGATATGGAGATGGGCAACAACAGCACTTGAGCAGTACTAAATCAATAAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTCGCCAATTTGCACCAATCAACACAATCCCTCGGCAGCATGAATGTGCAAGTCGATGCATCGGCTGCACAGAGCAACTCTTTATTGATGCCCATGACTCAAACTCGACCAAGAGGTCCGATGCTCAATGAAAACACTGCTTCGCATGTTCCAAGACTTCCACTATCCGTTGGGCAGCCCACTGTACCAAATGGAATTTCTAATGCTGCTGCTCTGGGGAGAAATGGGATTGCTGGTAATAGCAGAGGAGCTTCCTATAATCCAATTCCACAAACTTCTTCAATGCCAAGTTTTCCCACGAACCAAACTACAGAAATGTCTGTCAGTAGTTTCCCACTTGGAAGCACACCAGGCATATCTAGCATCCCACCGAAAGGCGCATTTCAAGAGGAAGATACTTCAGGAATTAAAGGATCTGGGGGATTTGTGCCTAGTTATGATATTTTCGACGAACTGCGCCAGCATAAGTCCCGTGATTGGGGACAAAATGTGGGCCTCACATACAATACCTCTCAGCGTGCGAATCCTTTACCCGGTAACATCGATGTCTTTCCGTCGGTTATAGTACATCAGAGCTTTTCTTCCTCCACCCAACAACAGACTGGACAGAACGGAGATTCAACTCTGATCGGAAAATCCATGTACTCCCAAGGAAAAGGTTTGGAACAAGGAAATCTCCAAAATATTGATCAAAACCTCCATAGTCTTGTTGAAAATCCTGCAAGGGTTAAGACTGAAATAATTTCTGATGCATACTCTCATTCGAACTTCTTCCCCGAGCAATATGAGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGAGCAGCTGAGAATGAATTTGACTTTGATGGATATTCCTTGGACAACATTCCTGTCTAG 2049 0.4573 MNLSNAKGSMSTASSSTARKSGDGAGAVDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSYSTEEGDRQQKASDEADYSSSANEGNWRNAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISPQEATFGTMSAFNGIDLQALAASGQLPAQSLAALQAAGLGRSTAKVGVSVPLVDERNLFSFENPRLRYGDGQQQHLSSTKSINLLHGIPTNMEPRQLANLHQSTQSLGSMNVQVDASAAQSNSLLMPMTQTRPRGPMLNENTASHVPRLPLSVGQPTVPNGISNAAALGRNGIAGNSRGASYNPIPQTSSMPSFPTNQTTEMSVSSFPLGSTPGISSIPPKGAFQEEDTSGIKGSGGFVPSYDIFDELRQHKSRDWGQNVGLTYNTSQRANPLPGNIDVFPSVIVHQSFSSSTQQQTGQNGDSTLIGKSMYSQGKGLEQGNLQNIDQNLHSLVENPARVKTEIISDAYSHSNFFPEQYEQDDLMSALLKQQEGIGAAENEFDFDGYSLDNIPV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0670 682 SMART REC_2 35 147 IPR001789 GO:0000160
Lele22g0670 682 Gene3D - 35 173 - -
Lele22g0670 682 MobiDBLite consensus disorder prediction 163 178 - -
Lele22g0670 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Lele22g0670 682 MobiDBLite consensus disorder prediction 1 25 - -
Lele22g0670 682 SUPERFAMILY CheY-like 34 159 IPR011006 -
Lele22g0670 682 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Lele22g0670 682 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Lele22g0670 682 Gene3D - 212 274 - -
Lele22g0670 682 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Lele22g0670 682 MobiDBLite consensus disorder prediction 191 212 - -
Lele22g0670 682 FunFam Two-component response regulator 211 274 - -
Lele22g0670 682 PIRSF RR_ARR_type-B 9 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele22g0670 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 312 IPR045279 GO:0009736
Lele22g0670 682 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Lele22g0670 682 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Lele22g0670 682 MobiDBLite consensus disorder prediction 1 21 - -
Lele22g0670 682 MobiDBLite consensus disorder prediction 163 212 - -
Lele22g0670 682 FunFam Two-component response regulator 35 172 - -
Lele22g0670 682 CDD REC_typeB_ARR-like 37 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0670 Lele-ChrLele22 4404944 4407942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0670 69 682 Response Regulator Gene Family AT3G16857 50.459 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele22g0670 Response_reg 1e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0670 22 4404944 4407942 Lele22g0670 22 4404944 4407942 ECH
Lele22g0670 22 4404944 4407942 Lele23g1357 23 18588683 18591643 hybridization
Lele22g0670 22 4404944 4407942 Lele24g0667 24 4438683 4441625 hybridization