Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0612 ATGACAATGCGGGACCCGACCAATCTGACTGCCGCTCTGCGGGAGCCGGCGGTCAATCGGTTTGATGGTGGAAGTTTTGCGAAATTTGTTGTTGCATCTGTACCCCGGACAGCTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAGCATGGGAACGTGCTTGAGGTTGCTTGGATCAAAGACAGAAAAACTGGGCAACAACAAGGTATTTGTGATCTTGATATTCCAAGACTATTTTATGTGTTTGTTGGCAACTTGCGATTCATGAGCCACTTCATGAATGGAAGACCTTTAGGTCATGTGTTGGATGTTCATATGCAGTTGGATCGGTATTTGGTTGAATCTGCTGCTAGCCAGTACGTATTGAAATTTGTGGTGTTATTGCTTCATGATGCTGATCAGGCAATTAGAGCATTGGACGATCAACATACTCTTCCTGGAGGTGAAGGTCCAATCCAAGTGAGATATGCTGATGGTGGACGGGAACGTCTTGGTGCAGCTGGGTTCAAATTATATGTGGGATCTTTGAACAAACAGGCTACGGAAGAGGAAGTTGAGGAAATTTTCTCAAAATATGGACTGGTTGAATATGCATATATCATCCGTGATAAGATGGAGCAAAGCCGTGGATACGGTTTTGTTAAGTACTCTTGTAGAGAGATGGCACTGAAAGCTTTAAATGCACTTAATGGAATTTATACAATGAGAGGTTGTGATCAACCATTAACTGTCAAGTTTGCTAATCCAAAGAAACCTCAGCAAGTAGACTCAAGTTTTGACCGGTCAGATTTGACTCTGTTGGCTTGTGCCCATGATATGAATGAAGTCATGCTCAGTCCTCCATCCTATGTTAATGAACCTATGGGTGATTGTATCCCTCCTCCTAATGCTTGGCGTCCAATGCACCTGCCTATGGGACCATCCTCTCATTGTGGTCCTCATGGTGTAAGGTCTCCACTGCTTCCAAGATCTAGTGGCCCTGCAATGCCTATGAATCCAAATTTGAACCCAGCAATTTCACAACTTCCACCTGCTAGCCAGCAAATGTTATCATTGCGGAAACCTATGCATTCGTCTCAGGACTTGCCTCCTTCCCTCCATTCGTACCCTCAAGCTTCAATGCACTACTTACAGACGCTAATGTCTCTTTCATCAGTTAGGCAAGTTGGTCAGCCGCAACCTGTTTTGTCTGGGGGGCCTCTTCCTTCACAGCAGGTACCTGGCATAAGTGGACAGTTACCAGCTTCCCATCGTCAAACTCAACAGAATGTTCCATCTGCTGCAATGCCTCAGAGACCTCTTGATATCAGCTGGCAATCTAATAAAGCTGTAAATGCTGCAAACCAGCAGCAACTTCCCGCGGCGTTGCAGCAGCAGCAGCCTCTTCAGCAGTCCCCATCTCAGTTGGCTCAGTTATCGTTACAACAATCTCAGACTTTACAAGCAAGGTTCAATTCATGTCAGCAGGCCATTTCCCAGATTCAACAATTACAAATGACGCAACCATCTAATCAAGATTTAGCATTGCTGCCAAATGCAGAAGCTGCTAAAAAGCAGTCTCAATGGGCTGTGACTGTACCACAGGCAGTGACCAGTACTCCCACTGCTGCAGCAGCCACAGATGTTCCTTCATTTGCATCTGCTTCTTCTACACCTACAATAAACCAGAACATGGCTCTTTCAAAATGCATTTGGACAGACCATATATCTCCTGAGGGCTACGAATATTACTATAATAGTTGGGATAAACCAGAGGAGTTAGCATTATCTGAAAGGCAAAAGCAACAGCAAATGCCAACTTCTCACCAGTATCAACCTCAGTTACAAACACCAGCATTATCTTCCCTGATAGCTCCCCAGTCTCAACAAGTCGCAACAGGTGCTGCCTCAAGGTCAGGTTCAGATTCTCCACCAGCAACAGATACAGCAGCCTTCTTTATCTTCTGTAAGTATCTCTATGAATTCTTTCATTGTGGTGTTGAAAGAAGATTCTGTTACGTTGACTTTGTTTCTGGATTTCTAGTATCAGGCTTATGGAGTTACAAGCTATTGGACGGCATTCTTAAGGAAGTTGGACATATCCAATCACAGACATCAGGTGTTCCCACTGCTGGAGCAGCCATACCTGTTCCTTCATTTGCATCTGCTTCTTCTACACCTACAATAAACCAGAACAGGGCTCTTTCAAAATGCATTTGGACAGACCATATATCTCCTGAGGGCTACGAATATTACTATAATAGTGCAAAAGCAACAGCAAATGCCAACTTTTCACCAGTATCAACCACAGTTACAAACACCAGCATTATCTGCCCTGACATCTCCCCAGTCGCAACAGGTGCTGCCTCAAGGTCAGGTTCAGATTCTCCCCAGCAACAGATACGGCAGCCTTCTTTATCTTCTGAAGTTGGACATATCCAATCACAGACATCAGGTGGTGATCCTGCGCTCTTCCAACAGGAAATTGAAAATGGGGGATGA 2481 0.4474 MTMRDPTNLTAALREPAVNRFDGGSFAKFVVASVPRTATEEDIRPLFEEHGNVLEVAWIKDRKTGQQQGICDLDIPRLFYVFVGNLRFMSHFMNGRPLGHVLDVHMQLDRYLVESAASQYVLKFVVLLLHDADQAIRALDDQHTLPGGEGPIQVRYADGGRERLGAAGFKLYVGSLNKQATEEEVEEIFSKYGLVEYAYIIRDKMEQSRGYGFVKYSCREMALKALNALNGIYTMRGCDQPLTVKFANPKKPQQVDSSFDRSDLTLLACAHDMNEVMLSPPSYVNEPMGDCIPPPNAWRPMHLPMGPSSHCGPHGVRSPLLPRSSGPAMPMNPNLNPAISQLPPASQQMLSLRKPMHSSQDLPPSLHSYPQASMHYLQTLMSLSSVRQVGQPQPVLSGGPLPSQQVPGISGQLPASHRQTQQNVPSAAMPQRPLDISWQSNKAVNAANQQQLPAALQQQQPLQQSPSQLAQLSLQQSQTLQARFNSCQQAISQIQQLQMTQPSNQDLALLPNAEAAKKQSQWAVTVPQAVTSTPTAAAATDVPSFASASSTPTINQNMALSKCIWTDHISPEGYEYYYNSWDKPEELALSERQKQQQMPTSHQYQPQLQTPALSSLIAPQSQQVATGAASRSGSDSPPATDTAAFFIFCKYLYEFFHCGVERRFCYVDFVSGFLVSGLWSYKLLDGILKEVGHIQSQTSGVPTAGAAIPVPSFASASSTPTINQNRALSKCIWTDHISPEGYEYYYNSAKATANANFSPVSTTVTNTSIICPDISPVATGAASRSGSDSPQQQIRQPSLSSEVGHIQSQTSGGDPALFQQEIENGG 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0612 826 SUPERFAMILY RNA-binding domain, RBD 26 71 IPR035979 GO:0003676
Lele22g0612 826 SUPERFAMILY RNA-binding domain, RBD 168 254 IPR035979 GO:0003676
Lele22g0612 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 237 IPR000504 GO:0003723
Lele22g0612 826 MobiDBLite consensus disorder prediction 779 817 - -
Lele22g0612 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 249 IPR000504 GO:0003723
Lele22g0612 826 SMART rrm1_1 28 155 IPR000504 GO:0003723
Lele22g0612 826 SMART rrm1_1 170 245 IPR000504 GO:0003723
Lele22g0612 826 MobiDBLite consensus disorder prediction 346 369 - -
Lele22g0612 826 MobiDBLite consensus disorder prediction 780 817 - -
Lele22g0612 826 CDD WW 565 586 IPR001202 GO:0005515
Lele22g0612 826 MobiDBLite consensus disorder prediction 390 430 - -
Lele22g0612 826 PANTHER RNA BINDING PROTEIN 27 478 - -
Lele22g0612 826 Gene3D - 25 166 IPR012677 -
Lele22g0612 826 Gene3D - 167 257 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0612 Lele-ChrLele22 4024808 4040339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0612 25 254 Eukaryotic Initiation Factors Gene Family AT1G71770 25.541 1.61e-10 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0612 22 4024808 4040339 Lele22g0612 22 4024808 4040339 ECH
Lele22g0612 22 4024808 4040339 Lele23g1428 23 18989519 19000040 hybridization
Lele22g0612 22 4024808 4040339 Lele24g0610 24 4067015 4076118 hybridization