Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0577 ATGGAGGCTAAATTTCGGGGGAAGAATCAGTATGTCTATGGACATGTGGTGTCTGAAATGAAAGCGGTTGGAAAGAAGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACGGCTAGTCCACTAAATTCAGTTCCATCTGATTGTAGAAACAAGCAGTCTTTCCCAGTTGATCCTGAAATTCCTGCGAAAGCTAATACTTCTAACATTTTATCTTCTAATTGGGATGATGTCAACCCAGAGAAAGGAAAGAGAGAATTGGAAAAAAGGAGGAGAGCTGTTATATCTGAAGGTGATGAGCTGAATGATGAAGCTGGTTGTCTTAATTTAAACCTTGGGGCTAAAATTTACCCTATCATGGAAGGGGATGCAAAAAGTGGAAAGAAGACAAAGATAGTTGGGAGTGGGACTACTTCAAACCTAGCGGTTTGTCAGGTGGAAGATTGTAGGGCCGATCTTAGTAATGCAAAAGATTACCACCGTCGGCATAAGGTTTGCGATATGCATTCCAAGGCCAGCAAAGCACTGGTAGGAAATGTTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAGGGGAGAAGAAGTTGTCGGAGGCGTTTGGCAGGCCACAATAGGAGGAGGAGGAAGACACATCCTGATGCTGTCGTTAATGGAGGCTCCCTGAATGATGAAAGGGGCAGCAGCTATCTGTTGACAAGTCTTCTCCGTATACTGTCCAATATGCACTCAAATGGCTCAGATGCTACTAGGGACCTAGATATTCTCTCTCATCTGCTAAGGAATCTGGCAAGTCTGGCTGGTACAATCAATGGAAGGAACATAGCCTCCTTATTGGAGGGATCCCAAAGTTTGGTGAATGCTGGGACATCTGGAACTTCCCAAAAAGTGCCTAATCTAAATTCAAATGGGCCCGAACCCATCAAATCTCCTGGCTCTTCCATTAAGACAGATAATGGTCTCAGCAGTCGGGACCCTCCAAAGCCTATGGGACAGTCTGAGACAGGGCCTGCATATGATATGGCGAAAAAATGTTTACCTTCAGGTGATGTTGGGGTTGGGAGTTTAAAATCTCCTTCAGGATCACAGCCTTCAAATGTGCTTCTGTCAAGGGATAGCCTTCAACCCCAATCAGTTGCAGCAGAGACTACAGTTAGAAGGAACGGTTTAAATCATATTGACCTCAATAACGTATATGACGACATACAAGATGATGCTGAGAACCTTAGGAATTCTCATCCACCTGGGGCATCAGGTATTGGATCTCTTGGTCATCCTTCATGGTTACAACTTGACACTCAAAAGTCAAGTCCACCACAGACAAGCAGAAACTCAGATTCAACCTCTTCTCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCGAATGATTTTCCTCTTGTTCTTCGATCACAGATTCTCAGCTGGTTATCCCATAGTCCCACAGAGATTGAGAGCTATATAAGGCCAGGCTGTATCATATTAACAGTATACCTCTGTCTAGAAAAATCTGCATGGGAGGAGCTCTGCTGTAATTTAGGACTCAGCTTGAAAAAGCTTCTTGCTGCATCAAATGACCCTTTCTGGACAACAGGGTGGGTATATACAAGAGTGCAGGATTCTGTAGCCTTTCTGTACAATGGTCAGGTGGTTTTAGACGTTCCCTTGAGCCTTAGAAGCGCACAACATCGTAAGATTTCATGTATTAAACCACTTGCTGTTTCTTCAACGGCAAGCACTCAATTTGTTGTCAAAGGTGTCAACCTTTTCCATTCTAGCACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGGCACAGTATAGTTGTTGTGACTTGATTGATGGTGTTGATACAGCTACTCAAAACGATGAGCATCAGTGCCTTAGCTTCTCTTGTACTATACCAAGTGTTACTGGGAGGGGATTTATTGAGGTGGAGGATCATGGTCTTAGCAGCTGTTCCTTTCCTTTTATTGTCGTGGAGCCAGAAATTTGTACAGAGATCTGTAATTTGGAGAGTGTGATTGAGGCAGATGAGATCTGTAAAGATGTACAGATGAGAAGCAAACAAATGGAAGAAAAGACTCAAGCCTTGGATTTCATACAAGAAATAGGTTGGCTCCTTCATAGAAGTCGCACGAAAGCTAGGTTGGGTCCCATGGCACCTGTCCAGGATCTGTTCCATTTCAATCGGTTCAAGTGGCTTGTTGACTTCTGCATGGACCGTGATTGGTGTGCTGTGATGAAAAAGCTTCTGGACATTATGTTTGAGGGTACTATTGATGCAGGAGAGCATACCTCTGTCGAGCTTGCATTGTTAAACTTGGGTCTTCTACATAGAGCTGTGAGGAGAAATTGCAGGCCTATGGTTGAACTACTGTTGAAATTTGTACCAGTTCAATCTTCAGACGATGACAGTAAGGAGAAACAAGTTGGCAAACACTCTGACAGATTCTTATTTAAACCCGATAATGTTGGCCCTGCTGGTTTGACTCCCCTTCATGTTGCCGCAAGCATTCATGGCTCAGAGAATGTATTGGATGCATTGACTGATGACCCTGGAATGGTGGGAATCAAGGCATGGAAAAGTGCCCGGGACAACGTGGGTTTGACCCCAGAGGACTATGCATCCATGCGGGGCTACCGCTCCTACATTCAACTCATCCAGATAAAAACAAGTAAGAGAAGTGATGAAACTCATCACCACGTGCTCGACATCCCATCTTCCCTTGTAGATAGTAATACAAAGAAGAAGCAACGGTCATCATCGAAAGTTTCAAGCTTGCAAACCGAGAAGATTGAAATGGCAGAAGCAGCAGCAGCGACGATTCCACATCAGTGCGGGCTATGTCAGCACAAGGTGGCTTGTCACAGCACGAGGACAGCGCTGGTTTATAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCCCAAGTCTCCTATGTCTTCCAGCCCTTCAGATGGGAATCATTAGATTATGGCACAATGGAGAGGAGGCCTCCAATTAAGAATTTGAAGAAGAAGTTGGACCGAAAGGTCAAGGCTGAGGCCTGGGTCAACACTGTCACTGAATGCTTGGCTGATAGAATTGATAAAAAACAATGGCTTCAAGCTCTTGAGGTATTTGAGATGCTTAGAGAGCAATCCTTTTACCAACCAAAAGAAGGGACTTACATGAAACTCATTGTATTGCTTGGAAGATGTGGCCAACCTCAACGTGCCCATCAGCTTTTCAAAACTATGGTTGAAGAAGGTTGTCAGCCTACTTCCGAACTCTACACGGCTTTGCTCGCAGCGTACTGTCGCAACAACCTTATTGATGAAGCATTTTCAACTCTTAATGAGATGAAGAACCTCCCTCTCTGCCAGCCTGATGTTTACACTTACAGTACTTTAATTAAGGCTTGTGTGGATGCTTTGAAATTTGATTTGGTTGAGTCGCTTTATGAAGAGATGGCGGAAAGGTCTATCACCCCGAACACGGTCACTCAAAACATCATCTTTAAGTGGATATGGCAAGGCAGGGAAATGCATGCCGAGGGTATGAAAGCCGATACCAAGACTTTCTGCTGCCTTATCAACGGTTATGCGAATGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTAACTTGGCTAAGAAGTTTGAGGTACCTGAGAATGTCTCATTTTGCAATGCCATCATCTCAGCATGTGCAAAGGCCCAGGATTTGATCGAAATGGAGAGAGTTTTCAACCGTATGAAGGATAAGCTGTGCCAGCCAGATGACACTACATACTGTATCATGATTGAGGCGTATGGAAAAGAAGGTATGCGTGACAAAATTTACTATTTAGAGCAGGAAAGGCAGATGATCACTGAGGATATAGAAAGTGAACAAGCTAATGAATGA 4011 0.4413 MEAKFRGKNQYVYGHVVSEMKAVGKKSLEWNLEDWKWDGDLFTASPLNSVPSDCRNKQSFPVDPEIPAKANTSNILSSNWDDVNPEKGKRELEKRRRAVISEGDELNDEAGCLNLNLGAKIYPIMEGDAKSGKKTKIVGSGTTSNLAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGRRSCRRRLAGHNRRRRKTHPDAVVNGGSLNDERGSSYLLTSLLRILSNMHSNGSDATRDLDILSHLLRNLASLAGTINGRNIASLLEGSQSLVNAGTSGTSQKVPNLNSNGPEPIKSPGSSIKTDNGLSSRDPPKPMGQSETGPAYDMAKKCLPSGDVGVGSLKSPSGSQPSNVLLSRDSLQPQSVAAETTVRRNGLNHIDLNNVYDDIQDDAENLRNSHPPGASGIGSLGHPSWLQLDTQKSSPPQTSRNSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTVYLCLEKSAWEELCCNLGLSLKKLLAASNDPFWTTGWVYTRVQDSVAFLYNGQVVLDVPLSLRSAQHRKISCIKPLAVSSTASTQFVVKGVNLFHSSTRLLCALEGKYLAQYSCCDLIDGVDTATQNDEHQCLSFSCTIPSVTGRGFIEVEDHGLSSCSFPFIVVEPEICTEICNLESVIEADEICKDVQMRSKQMEEKTQALDFIQEIGWLLHRSRTKARLGPMAPVQDLFHFNRFKWLVDFCMDRDWCAVMKKLLDIMFEGTIDAGEHTSVELALLNLGLLHRAVRRNCRPMVELLLKFVPVQSSDDDSKEKQVGKHSDRFLFKPDNVGPAGLTPLHVAASIHGSENVLDALTDDPGMVGIKAWKSARDNVGLTPEDYASMRGYRSYIQLIQIKTSKRSDETHHHVLDIPSSLVDSNTKKKQRSSSKVSSLQTEKIEMAEAAAATIPHQCGLCQHKVACHSTRTALVYRPAMLSMVAIAAVCVCVALLFKSSPQVSYVFQPFRWESLDYGTMERRPPIKNLKKKLDRKVKAEAWVNTVTECLADRIDKKQWLQALEVFEMLREQSFYQPKEGTYMKLIVLLGRCGQPQRAHQLFKTMVEEGCQPTSELYTALLAAYCRNNLIDEAFSTLNEMKNLPLCQPDVYTYSTLIKACVDALKFDLVESLYEEMAERSITPNTVTQNIIFKWIWQGREMHAEGMKADTKTFCCLINGYANAGLFHKVISSVNLAKKFEVPENVSFCNAIISACAKAQDLIEMERVFNRMKDKLCQPDDTTYCIMIEAYGKEGMRDKIYYLEQERQMITEDIESEQANE 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0577 1336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1165 1199 IPR002885 -
Lele22g0577 1336 TIGRFAM PPR: pentatricopeptide repeat domain 1264 1295 IPR002885 -
Lele22g0577 1336 TIGRFAM PPR: pentatricopeptide repeat domain 1132 1158 IPR002885 -
Lele22g0577 1336 TIGRFAM PPR: pentatricopeptide repeat domain 1097 1129 IPR002885 -
Lele22g0577 1336 TIGRFAM PPR: pentatricopeptide repeat domain 1167 1201 IPR002885 -
Lele22g0577 1336 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Lele22g0577 1336 MobiDBLite consensus disorder prediction 934 956 - -
Lele22g0577 1336 MobiDBLite consensus disorder prediction 418 474 - -
Lele22g0577 1336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1260 1294 IPR002885 -
Lele22g0577 1336 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Lele22g0577 1336 MobiDBLite consensus disorder prediction 301 341 - -
Lele22g0577 1336 MobiDBLite consensus disorder prediction 214 234 - -
Lele22g0577 1336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1129 1163 IPR002885 -
Lele22g0577 1336 Pfam SBP domain 149 222 IPR004333 GO:0003677
Lele22g0577 1336 Gene3D Tetratricopeptide repeat domain 1214 1336 IPR011990 GO:0005515
Lele22g0577 1336 MobiDBLite consensus disorder prediction 301 397 - -
Lele22g0577 1336 Gene3D - 763 919 IPR036770 -
Lele22g0577 1336 SUPERFAMILY Ankyrin repeat 803 915 IPR036770 -
Lele22g0577 1336 Gene3D - 139 210 IPR036893 GO:0003677|GO:0005634
Lele22g0577 1336 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Lele22g0577 1336 Pfam PPR repeat family 1260 1306 IPR002885 -
Lele22g0577 1336 Pfam PPR repeat family 1133 1177 IPR002885 -
Lele22g0577 1336 Gene3D Tetratricopeptide repeat domain 1161 1213 IPR011990 GO:0005515
Lele22g0577 1336 Gene3D Tetratricopeptide repeat domain 1035 1160 IPR011990 GO:0005515
Lele22g0577 1336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 860 IPR044817 GO:0003677
Lele22g0577 1336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1094 1128 IPR002885 -
Lele22g0577 1336 MobiDBLite consensus disorder prediction 935 956 - -
Lele22g0577 1336 Pfam PPR repeat 1097 1126 IPR002885 -
Lele22g0577 1336 Coils Coil 89 109 - -
Lele22g0577 1336 MobiDBLite consensus disorder prediction 439 474 - -
Lele22g0577 1336 MobiDBLite consensus disorder prediction 367 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0577 Lele-ChrLele22 3778745 3787849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0577 1 1035 SBP-box Gene Family AT3G60030 47.751 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele22g0577 SBP 1.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0577 22 3778745 3787849 Lele22g0577 22 3778745 3787849 ECH
Lele22g0577 22 3778745 3787849 Lele23g1475 23 19320813 19323588 hybridization
Lele22g0577 22 3778745 3787849 Lele24g0565 24 3755092 3758730 hybridization