Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0543 ATGGCTTCCTCGTCCCCTCTCAAACTCTTCCTCCTTCTCTTCTCAATCTTCCTCTCACACACTTGCGCTTCTCCTTCAACAACACTACACCCAAATCTCACTTCCAGAAGATCTTTCTGCACAACCACGCCATACCCAGCAGCTTGCTTCGATTCTCTGAAGGTCGGCATTTCTATCAACATAAGCCCCAATATCCTCACCTACCTGCTTCAGTCTCTGCAAGTTGCCATCTCCGAAGCCACCCACCTCTCTGATCTATTCCACAATGCCGAAGGCGCCGGTTCTGGTTCTTCCAACAACCTCGTGGAGGAACAGAGAGGCTCAATTCAAGACTGTAGAGAGCTTCATCTTTCAACGTTGACTTCCCTCAAAAGATCACTATCGGGGGTTCGTAATTCTCCCACTTCTTCCAGGAAGCTCGCCGACGCCAGAGCCTACCTCAGCGCCGCCGTGACCAACAAGAACACTTGCTTGGAAGGTCTCGACTCTGCTACGGGCTCCCTCAAGCCTCTTCTCGTGGACTCTACCTTCAAAGCTTACAAACGTGCCAGCAACTCTCTCTCCATGCTCCCTAAGCCAGGGGTTTACAAGGAAAATGTGGAGATCCCAAGTTACAAGACCAACGTTGTTCTGCTCGGAAATGGAAGCGATGTCACTCTCATTACTGGGGACAGAAGTGTGGGCGGTGGGTGGACCACCTTCAGATCTGCAACTCTAGCTGTGTCCGGTGATGGCTTTCTGGCACGAGACATAGGGATAGAGAACAGTGCAGGGCCGGAGAAGCAGCAAGCGGTGGCGTTGAGAGTTAACGCAGACTTAACGGCGCTGTACAGATGCGCCGTTTATGGCTACCAAGATACTCTCTACTCTTATATTGATGATTTCGTGGACCCAAAGGGGTGGACGGAGTGGTCTGGTTCCAATGGCGATGATTTGGAGAGTTTGTACTACGGAGAGTACGATAATTACGGGCCGGGCTCGGAAGCCAATTTGAGGAATTTGCATGCTTCTTTCTATTTTGTGGTGTTCCCAGACTTCGATCTCATCACTGAGAAAAGAAAAAATGACAGGAAACAGAAGCTCAAGCGCAGAATCGCCATCGGCGCAGTTTGCACCATCGTCATCATTGGTCTTATAGGAGCTGCCGCTTTCGTAATAGTCAGCAATAACAGTGAAGAAGAAAGCCAAGTCAATGACCATAACAAGAAATCCCCATCGTCCTCTTCTTCTACCCCTTCAAAGAGTAATTCCAACCAGATTTCTGTAGCAGAGAAACTCGTGAAGACCATTTGCAGTTCCACCGATTATCAGGACAAATGCGAGACAAGTCTCACCAAGGAAGTGAAAAAGGATCCAAAACTAGCACAACCCAAAGACGTTCTTAAACTTGCGATCAGTGTCGCTCAGGACGAGGTTAATAAGGCCATCAATAAAACCAAAAGCCTCAACTTTCAATCCGACAAAGAGAAAGGGGCTTACGAGGATTGCACGAAGCTTCTGGATCGTGCGAAAGACGATCTAGGGAATTCATCCTCACATGTCGGATCAATCGACATGACCAAGCTGACGTCATCCTCATCGGATTTGAACAGTTGGCTCAGTGCGGTTATCGCGTTCCAGGGAGCTTGCCTCGATGGGTTTGAAGATGGGAAACTGAAGACGGATATGAAGAGTGCGTTTAATGATTCAAAGGAGTATGTTAGCAATTCTCTTGCAATTCTATCGGAGTTAGGCTCCGCTGTTTCTTCGGCATTAAGGGAAGGTGCTAGTCGTCACTTGCTGTCGTCGTCCGATGATAAAGGTCTTAAGGAGTGGATGAACGATGAAGAACGACGCATGTTAAAGGCGGCGGATGATAAACCTACTCCTAACGTCACCGTCGCTAGCGACGGCAGTGGAGACTTCAAAACCATCTCCGAAGCTTTAAAAGCCATACCACAAAAATACGATGGACGGTATGTGCTTTATGTTAAAGCAGGAACATATGATGAAACTGTGATAATAGAAGGGCGAATGGTAAACGTAACCCTTTATGGTGATGGATCACAAAAAAGCATTATCACCGGCAACAAGAACTACGTAGATGGAGTAAGAACTTTCCAAACCGCATCATTTGCTAAAAATTTGTGCTTTGGTGATGATGCTGCAGCGGTAGAAGCAGATGGGTTCTTAGGGAAAGCAATGGGGTTCAGAAACACAGCCGGTCCAGAGAAGCACCAAGCGGTAGCAGCAAGAGTGCAAGGAGATCGTGCAGTGTTCGTGAACTGTCGTTTCGAAGGGTACCAAGACACTCTCTACGCACTAGCCCACCGACAATTCTACCGGAGCTGCGTGATCTCCGGCACAGTGGACTTCATCTTCGGCGACGCAGCCGCCTTGTTCCAGAACTGCATAATGAACGTAAGAAAACCCTTAGACAACCAGCAGAACATGGTGACAGCCCAAGGCAGAATGGACCCACAAGAAAAAACCGCCATCGTTCTGCAAAACTGCCAGATCAAGGCCGACGACTCCCTCGCCGCAGTGAAAGACAAGTTCAAGAGCTACCTCGGTCGGCCATGGAAGGAGTATTCAAGAACCATCGTCATGGAATCCGAAATTAGTGACATCATCGACCCTGAAGGGTGGATGGAATGGGAAGGCGACTTTGCACTCAAAACTTTGTTCTATGCTGAGTTCCACAACACAGGACCAGGTTCGAACACTGATAACAGAGTGAAGTGGGCTGGCTACAAAAATATCACTAGGGACGAGGCTAGCAACTTCACCGTCGAATCTTTCTTGGCCGGAAATTGGCTTTCTGGGTTCAACGTACCTGTTCAGCGAGGCTTTCGAAAAATTTTGCGTTACGTCTCTCCAAAACGATTCGAGGCATCAGGCATATCTGCCACCGACGTTAAGAAACTTAAAGATGCCGGTCTTTGGACGGTTGAATCTGTGGCTTTCTCTCCTAGAAAGGACCTTCTGCAGATTAAAGGAATCAGTGACGCTAAAGTTGATAAGATCATTGAAGCAGCTTCTAAATTGGTGCCGTTGGGTTTCACTAGTGCTGCCCAACTTCATTCCCAGAGGCTTGCAATTATTCAAATAACATCAGGATCAGAAGAGCTAGACAAGATATTGGAAGGAGGGATGGAGACAGGATCTATAACTGAGCTATATGGTGAATTTCGATCAGGGAAGACTCAGTTGTGTCATACTCTGTGTGTCACTTCCCAACTGCCACTTGATCAAGGAGGAGCTGAGGGTAAAGCTATGTACATTGATGCAGAGGGTACCTTTAGACCACAGCGACTCTTACAAATAGCAGAGAGGTTTGGACTGAATGGAGCTGATGTGTTGGAAAATGTTGCCTATGCTAGAGCATATAACACTGATCATCAATCACGGCTTCTGCTTGAAGCAGCTTCAATGATGGTGGAAACAAGGTTTGCTCTGGTAATAGTTGACAGTGCTACTGCTCTCTATAGGACAGATTTTAGTGGAAGGGGGGAACTTTCTGCCCGGCAAATGCATCTCGCGAAGTTCCTTCGTAGCCTTCAGAAGTTAGCAGATGAGTTTGGTGTGGCTGTTGTGATAACAAACCAAGTAGTTTCACAAGTAGATGGTTCTGCAGTCTTTGCCGGACCTCAAATCAAGCCTATTGGTGGCAACATTATGGCTCATGCAACAACGACAAGGTCCACACCTAAAAATATCAAGCTATATCTTCGAAAAGGTAGAGGGGAAGAACGCATCTGTAAAGTGATAAGTTCTCCTTGTTTGGCTGAGGCTGAAGCAAGGTTTCAGATATCTCCAGAAGGCGTCACTGATGTTAAAGACTGA 3825 0.474 MASSSPLKLFLLLFSIFLSHTCASPSTTLHPNLTSRRSFCTTTPYPAACFDSLKVGISINISPNILTYLLQSLQVAISEATHLSDLFHNAEGAGSGSSNNLVEEQRGSIQDCRELHLSTLTSLKRSLSGVRNSPTSSRKLADARAYLSAAVTNKNTCLEGLDSATGSLKPLLVDSTFKAYKRASNSLSMLPKPGVYKENVEIPSYKTNVVLLGNGSDVTLITGDRSVGGGWTTFRSATLAVSGDGFLARDIGIENSAGPEKQQAVALRVNADLTALYRCAVYGYQDTLYSYIDDFVDPKGWTEWSGSNGDDLESLYYGEYDNYGPGSEANLRNLHASFYFVVFPDFDLITEKRKNDRKQKLKRRIAIGAVCTIVIIGLIGAAAFVIVSNNSEEESQVNDHNKKSPSSSSSTPSKSNSNQISVAEKLVKTICSSTDYQDKCETSLTKEVKKDPKLAQPKDVLKLAISVAQDEVNKAINKTKSLNFQSDKEKGAYEDCTKLLDRAKDDLGNSSSHVGSIDMTKLTSSSSDLNSWLSAVIAFQGACLDGFEDGKLKTDMKSAFNDSKEYVSNSLAILSELGSAVSSALREGASRHLLSSSDDKGLKEWMNDEERRMLKAADDKPTPNVTVASDGSGDFKTISEALKAIPQKYDGRYVLYVKAGTYDETVIIEGRMVNVTLYGDGSQKSIITGNKNYVDGVRTFQTASFAKNLCFGDDAAAVEADGFLGKAMGFRNTAGPEKHQAVAARVQGDRAVFVNCRFEGYQDTLYALAHRQFYRSCVISGTVDFIFGDAAALFQNCIMNVRKPLDNQQNMVTAQGRMDPQEKTAIVLQNCQIKADDSLAAVKDKFKSYLGRPWKEYSRTIVMESEISDIIDPEGWMEWEGDFALKTLFYAEFHNTGPGSNTDNRVKWAGYKNITRDEASNFTVESFLAGNWLSGFNVPVQRGFRKILRYVSPKRFEASGISATDVKKLKDAGLWTVESVAFSPRKDLLQIKGISDAKVDKIIEAASKLVPLGFTSAAQLHSQRLAIIQITSGSEELDKILEGGMETGSITELYGEFRSGKTQLCHTLCVTSQLPLDQGGAEGKAMYIDAEGTFRPQRLLQIAERFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALVIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVSQVDGSAVFAGPQIKPIGGNIMAHATTTRSTPKNIKLYLRKGRGEERICKVISSPCLAEAEARFQISPEGVTDVKD 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0543 1274 MobiDBLite consensus disorder prediction 401 419 - -
Lele22g0543 1274 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 189 IPR035513 -
Lele22g0543 1274 Gene3D - 190 289 IPR012334 -
Lele22g0543 1274 Gene3D Invertase/pectin methylesterase inhibitor family protein 422 579 IPR035513 -
Lele22g0543 1274 CDD PMEI-like_3 429 579 - -
Lele22g0543 1274 FunFam DNA repair protein RAD51 homolog 951 1021 - -
Lele22g0543 1274 ProSitePatterns Pectinesterase signature 2. 779 788 IPR033131 -
Lele22g0543 1274 SUPERFAMILY Rad51 N-terminal domain-like 955 1012 IPR010995 GO:0000166
Lele22g0543 1274 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 425 577 IPR035513 -
Lele22g0543 1274 SUPERFAMILY Pectin lyase-like 192 338 IPR011050 -
Lele22g0543 1274 ProSiteProfiles RecA family profile 2. 1204 1274 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lele22g0543 1274 CDD PMEI-like_3 38 189 - -
Lele22g0543 1274 Pfam Rad51 1012 1272 IPR013632 -
Lele22g0543 1274 FunFam DNA repair protein Rad51 homolog 1025 1274 - -
Lele22g0543 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1273 IPR027417 -
Lele22g0543 1274 SUPERFAMILY Pectin lyase-like 622 935 IPR011050 -
Lele22g0543 1274 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 190 IPR035513 -
Lele22g0543 1274 TIGRFAM recomb_RAD51: DNA repair protein RAD51 956 1274 IPR011941 GO:0000150|GO:0000724|GO:0003690|GO:0003697|GO:0008094|GO:1990426
Lele22g0543 1274 ProSiteProfiles RecA family profile 1. 1026 1197 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lele22g0543 1274 SMART AAA_5 1047 1234 IPR003593 -
Lele22g0543 1274 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 173 IPR006501 GO:0004857
Lele22g0543 1274 TIGRFAM PME_inhib: pectinesterase inhibitor domain 411 577 IPR006501 GO:0004857
Lele22g0543 1274 Gene3D - 622 946 IPR012334 -
Lele22g0543 1274 Gene3D - 290 339 IPR012334 -
Lele22g0543 1274 SMART PMEI_2 422 573 IPR006501 GO:0004857
Lele22g0543 1274 SMART PMEI_2 31 189 IPR006501 GO:0004857
Lele22g0543 1274 Pfam Plant invertase/pectin methylesterase inhibitor 426 573 IPR006501 GO:0004857
Lele22g0543 1274 Pfam Plant invertase/pectin methylesterase inhibitor 37 189 IPR006501 GO:0004857
Lele22g0543 1274 Gene3D - 1026 1274 IPR027417 -
Lele22g0543 1274 Gene3D - 951 1021 - -
Lele22g0543 1274 MobiDBLite consensus disorder prediction 394 419 - -
Lele22g0543 1274 CDD Rad51_DMC1_radA 1030 1269 IPR033925 GO:0003677
Lele22g0543 1274 PANTHER PECTINESTERASE 387 934 - -
Lele22g0543 1274 FunFam Pectinesterase 423 578 - -
Lele22g0543 1274 FunFam Pectinesterase 4 621 944 - -
Lele22g0543 1274 Pfam Pectinesterase 188 291 IPR000070 GO:0030599|GO:0042545
Lele22g0543 1274 Pfam Pectinesterase 624 931 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0543 Lele-ChrLele22 3500488 3509951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0543 341 944 Carbohydrate Esterase AT2G26450 45.382 0.0 566
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0543 22 3500488 3509951 Lele22g0543 22 3500488 3509951 ECH
Lele22g0543 22 3500488 3509951 Lele24g0529 24 3495638 3498109 hybridization