Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0541 ATGTTCAATGCTCAGGGCCCTCCAAAAAAATCTCGTCTCCTTGCCATCCTCAGTGGAAATTCATGTGACAATAAACAAAAGCGGAAACAAGATGATTCTCAGGATCAATCTCCATACCCCATTCCAGATCTTACTTCATCCGGGCGTCTTGAGGTTAATGTTTTGGTCAAACCAACTGCTGATGAACTTCATCGAGTTCTTGAAGCATTGGAGCCAAATTTTGTTTACCTGCAAGGCGAGCAGCTAGAAGATAATGAACAAATTGGGTCCCTAGTATGGGAAGATGTTGATCTGTCTAGCACAGAAGCCTTATGTGAATTATTTTCTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAAGGAGAAAATTTGGCAGAGGCTCTCCATTCTAAGGGAATTCCTTACGCAATACACTGGAAGAGTGAATTTTCAAAGTATGCTGCATCACATTTTCGTCAAGCTTTTTTCTCAGTGGCACAAAGTACCTCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCTTCTTTCAGATTATACTGTGTACAAAACAATGTCTCACCTTCAAACCGCATGAAGAGCAGAAGCAAGCTTGAGCCACAAATGTTTGGTGACCCTCCTAACATTGATATTGCTCCATTTGAAGCAGACATGAATGGGGAAGAAAACTCACCTGAGACGATTTCTGCTCTGAAGATTTATGATGATGATATGAACATGAGATTTCTTGTTTGTGGAGTTCCCTGCATGCTGAATACTTGCTTATTGGAATCATTGGAGGAAGGACTGAATGCTCTCCTGTGTACAGAAATACGGGGATGTAAACTTCACAACCGGACAAGTGCTCCACCACCTCCTCTCCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGCAGTTCTGCTCATATATCACTCTTGGTGTCTGGTAGTGCAGATACATGCTTTAATGATCAGATTTTGGAGAATCATATAAAAAGGGAGCTGATTGAGAAGAGTCAGCTAGTTCGGGCATCAACTAACTGTGAACAAAGCAACTTACCTTCCTCTGAGCCTCGGAGGTCAGCCTCGATAGCTTGTGGGGCTAGCGTATTTGAAGTTTGCACGCAGGTTCCTACATGGGCTTCACTGGTTCTGAGACAGCTTGCACCAGAAGTGTCGTTCCGCAGCCTAGTTATGCTGGGAGTAGCCAGTATTCAAGGATTGCCTGTTGCATCATTTAAGAAAGTTGATGCCGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCGGAAAAAAATTGCCTTAGTGACCCCATTTCTTTTGGGCATCCTAGTTGGCTTGTACCTCCAACGCCTACTCGAAAAAGATCAGAGCCTTTCTCTGGAATAAAGTTTGTCAATTCTAGTAGCCTTCAAGTCAGTGATAGTGGTAACAATAGACAGAAATTGAACATTGCAGCAATGAGGCCAATCCCTCACTCACATTGTCAAAAGATTCGACCTTTTTCTGGATTGTCCGAGGTGGAAAGGCTTGATGGAGAACGTGGAAAATCAAATCTGCCAATGGCTCCAATAAAGCATAATGGTTTAGGCTCTAATCCAGTCATAAATAGGAAATCTTCGTCGACTAACTTTCAGGCTCAGCAGATCGTTACCTTAAATCCACTACCCATGAAGAAGCATGGTTGCGACAGAGCTCCAATACGGACTTGTTCAGAGGAGGAATTCTTGAAGGATGTAATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCACAAGGTGGTCTTGCTGAATTCCCTGAAGCCATTCTGAACGCTAAACGCCTCGATCTTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTCTGACAAATAGAATGACAGGTGTTGGCAATACACTTAAAAGACATTATGAAACTTATCTTCTAGAGTATGAACTGGCTCATGATGACGTAGATGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGTGATTGGGTGAATTGCGGGATATGCGGCGAGTGGGCTCACTTTGGCTGTGATAGGCGTCAAGGACTCGGTGCATTTAAGGATTACGCTAAAACTGATGGGCTAGAGTACGTTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCTCAGAAAACTTCAAACGGATATTAA 2250 0.4347 MFNAQGPPKKSRLLAILSGNSCDNKQKRKQDDSQDQSPYPIPDLTSSGRLEVNVLVKPTADELHRVLEALEPNFVYLQGEQLEDNEQIGSLVWEDVDLSSTEALCELFSSKLPNTVYLETPKGENLAEALHSKGIPYAIHWKSEFSKYAASHFRQAFFSVAQSTSSHTWDAFQLALASFRLYCVQNNVSPSNRMKSRSKLEPQMFGDPPNIDIAPFEADMNGEENSPETISALKIYDDDMNMRFLVCGVPCMLNTCLLESLEEGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQILENHIKRELIEKSQLVRASTNCEQSNLPSSEPRRSASIACGASVFEVCTQVPTWASLVLRQLAPEVSFRSLVMLGVASIQGLPVASFKKVDAERLLYFCSRQSEKNCLSDPISFGHPSWLVPPTPTRKRSEPFSGIKFVNSSSLQVSDSGNNRQKLNIAAMRPIPHSHCQKIRPFSGLSEVERLDGERGKSNLPMAPIKHNGLGSNPVINRKSSSTNFQAQQIVTLNPLPMKKHGCDRAPIRTCSEEEFLKDVMQFLILRGHSRLIPQGGLAEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0541 749 CDD PHD_ARID4_like 682 733 - -
Lele22g0541 749 SUPERFAMILY ARID-like 572 686 IPR036431 GO:0003677
Lele22g0541 749 MobiDBLite consensus disorder prediction 23 45 - -
Lele22g0541 749 Pfam ARID/BRIGHT DNA binding domain 575 672 IPR001606 GO:0003677
Lele22g0541 749 ProSiteProfiles ARID domain profile. 572 676 IPR001606 GO:0003677
Lele22g0541 749 Gene3D - 565 677 IPR036431 GO:0003677
Lele22g0541 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 734 IPR013083 -
Lele22g0541 749 SUPERFAMILY FYVE/PHD zinc finger 668 736 IPR011011 -
Lele22g0541 749 CDD ARID 574 672 - -
Lele22g0541 749 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 9 749 IPR042293 -
Lele22g0541 749 SMART ARID_2 569 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0541 Lele-ChrLele22 3481539 3487681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0541 1 748 ARID Transcription Factor Family AT3G43240 63.431 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele22g0541 ARID 1e-13 CL0123