Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0522 ATGGTGAAGCAGATCGCCGATAAGCCCTCCGAACGAAGCGATTCTAAGTTCAGAGGAGTTCGTAAGAGGAAGTGGGGCAAGTGGGTTTCCGAAGTTAGACTACCTAACAGCAGGGAGAGGATCTGGTTGGGATCTTATGACTCCGCCGTGAAGGCGGCGCGTGCCTTTGACGCCGCCCTTTTTTGCTTACGCGGCCGCTCCGGTAACTTTAATTTCCCCGATAACCCGCCCGACATCTTCGGCGGCAGGTCCATGTCCCCGGCTCAGATTCGAGCCGCCGCGGCCCGGTTTGCCAATTCGGAGCATTCGACGGATCGATCGGATAAGCCCATGATCCGAGAATTGGCAGAGGAATCTCCGTCTCATTCACTTTCGGAAGCGACGGTTGCGCCCGTGGAATCTTCGTCACCCTCGCTCTCTGAGGTGACGGTGCAAACGGACAGTGAAATGACACTAAACGAATGGATCCCGGATCTTTTTAAGACGGTGGGATCGGGTAATTACGCGAATGAATACGGGATATTCGCGGGGTTTGACGATCTAACCAGTGAGTTCTACATACCAGAAATGCCTAGTGTGAGTTACGAGGAAGAAAACATGGAGGGGTTGATAATGGACGACTCATTCCTGTGGAATTTTTAA 642 0.528 MVKQIADKPSERSDSKFRGVRKRKWGKWVSEVRLPNSRERIWLGSYDSAVKAARAFDAALFCLRGRSGNFNFPDNPPDIFGGRSMSPAQIRAAAARFANSEHSTDRSDKPMIRELAEESPSHSLSEATVAPVESSSPSLSEVTVQTDSEMTLNEWIPDLFKTVGSGNYANEYGIFAGFDDLTSEFYIPEMPSVSYEEENMEGLIMDDSFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0522 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 147 - -
Lele22g0522 213 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Lele22g0522 213 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lele22g0522 213 MobiDBLite consensus disorder prediction 121 141 - -
Lele22g0522 213 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Lele22g0522 213 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lele22g0522 213 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lele22g0522 213 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lele22g0522 213 MobiDBLite consensus disorder prediction 116 141 - -
Lele22g0522 213 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Lele22g0522 213 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Lele22g0522 213 MobiDBLite consensus disorder prediction 1 20 - -
Lele22g0522 213 FunFam Ethylene-responsive transcription factor 2 15 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0522 Lele-ChrLele22 3323369 3324010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0522 15 213 AP2-EREBP Transcription Factor Family AT1G19210 49.020 2.19e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele22g0522 AP2 4.9e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0522 22 3323369 3324010 Lele22g0522 22 3323369 3324010 ECH
Lele22g0522 22 3323369 3324010 Lele23g1543 23 19831847 19832720 hybridization
Lele22g0522 22 3323369 3324010 Lele24g0507 24 3301637 3302431 hybridization