Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0478 ATGGAGAGAAACAGTTTGAACACCAGCTTTAAAGATGGCACTTTCACCAGCAACAGCAACAAGAACCAAGTAATGAAAGAATATTGGGACTGCAAATCTCAGATCAGCTATGGAGGAGATGATTATATAAATGGATTCTCGTGGCCTCCAAGATCATACACTTGTAGCTTCTGCAAGAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCATATGAATGTTCATAGGAGGGACAGAGCCAGGCTCAGGCAGCAGTCACCTCCCACCACTACAACTCATGACAGTCACTCCCCCATGCTCAACCTAAATCTTAACCCTACCTCTGGTGGTCCTGAGTTTTCAACTTCAACTTTGTCCTTGTTACCATCTTCATCTTCTTCTACAATGCTCAAAAAACCATTCTCTGCTTGCACTTTGCCCTCCTTCGTTTCTCCTATACTTCCTTCTTCATCTTCTCCTCTCCCAGCTGCATCTACATCTCCTTCTTATGATCTGAAAAAATGGGCTGTGGACGGTATCATGTTGAACCCTCCAAGCACCAAGGCCTCAGAATCTACAAAGATGAAGAATATAGCAAATTCTTTATCAGGGTTTGGAGACTGTAATGACCCTTTTGCGCAAGAAGTTGGTTGCAAAGTGGTAAAAAAGGCTGAGATCATTAGGTTGGACTTGCATATAGGTTTAGTTAGCGATCATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGGTACTTACTCTTAG 744 0.4341 MERNSLNTSFKDGTFTSNSNKNQVMKEYWDCKSQISYGGDDYINGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQQSPPTTTTHDSHSPMLNLNLNPTSGGPEFSTSTLSLLPSSSSSTMLKKPFSACTLPSFVSPILPSSSSPLPAASTSPSYDLKKWAVDGIMLNPPSTKASESTKMKNIANSLSGFGDCNDPFAQEVGCKVVKKAEIIRLDLHIGLVSDHSKDDLDLELRLGTYS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0478 247 Pfam C2H2-type zinc finger 53 77 - -
Lele22g0478 247 PANTHER OS07G0101800 PROTEIN 21 245 - -
Lele22g0478 247 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lele22g0478 247 SMART c2h2final6 53 75 IPR013087 -
Lele22g0478 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lele22g0478 247 MobiDBLite consensus disorder prediction 84 117 - -
Lele22g0478 247 Gene3D Classic Zinc Finger 49 101 - -
Lele22g0478 247 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Lele22g0478 247 MobiDBLite consensus disorder prediction 77 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0478 Lele-ChrLele22 2982202 2982945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0478 41 244 C2H2 Transcription Factor Family AT3G23130 42.233 3.10e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele22g0478 zf-C2H2_6 4.7e-07 CL0361