Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0471 ATGTCCATTGTATCTGGACGGTCAAGGGCAGGGTATCAAAAGGTCGGGCTGTTTAAGGGGCATAACGGAATTACTTTTGTACCTTGTGAGAAAAATAATGATAGACTACTGTGTGCATTAGACCACAAGAGATCTAACGAGGACCGGAGGGTTCATTTCTCTGCGTTTCCTTTCACATCTGATATGGATCTTGCAGGAAGAAGATCCTTGATTTCTGGTTCTGGGTCGCCGTTATCAAGCCCAGTGAGTTCAATCCTTCACCCACATTCGCATTCTGCGAGTACCAGTTTTCCCATTATAGCTATCGCTATAATAGGGATACTCGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGCATAGATCTCCTAAGACGGTTCTCTCCATCCTGGCGGCAAGAGGAACCACCGACGACGTATTCGCCGGCGGGCACGGAGCCTCGAGGACTCGACGAGGCTGTGATCCGATTAATCCCAGTCATCCATTACAAAGCAGAGGAAAACAGAGAATCCGGAGAGCGAAGCTTCACGGAATGCTCTGTTTGCTTGACCGAGTTCCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCAGCCACGTTTTCCACATAGATTGCATCGACGTTTGGCTTCAGAACAACGCCAATTGCCCACTTTGCAGAACAAGCATTTCGCTATCAAACAGATTCCAAGTCGACCAGATTCTAAATTCCAGACCCTCCAGCCAAGATCGACGCCGGTATGGCGAAAATCTCAATGGTGAGGATGAAGATTTTGTTGTGATTGAACTGAGCACTATCGGTGACGATAGAGGCCAAAACTCGAACGGAACACAGGAAAGGGAAAACCCACCACGAGAAGTGAGCCCTTCGCCTAGGAAGATAATGGAGCAGAAGAAAAAACCATGTAAGTTTCAGAAAGTGACGAGCATGGGAGACGAGTGCATCGATACAAGAGGTAAAGATGGGCAATTCTCAGTACAGCCCATAAGGAGGTCATTCTCCATGGATTCTTCAGGGGATAGACAGTTGTACATGGCGGTTCAAGAAGCTCTGAAGAAACAGAACAGGGAACAAGCGAGTGAGGTATCATCGTCCTCCATTAATGAAGGGTGTAGCAGTAGCAGTAGTGGTAGAGTGAAGAGGTCATTCTTTTCCTTCGGACATGGTAGCAGTAGATCCAGAAGTTCAGTCCAACCTGTTTACGGGGACCACTAA 1248 0.4752 MSIVSGRSRAGYQKVGLFKGHNGITFVPCEKNNDRLLCALDHKRSNEDRRVHFSAFPFTSDMDLAGRRSLISGSGSPLSSPVSSILHPHSHSASTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSWRQEEPPTTYSPAGTEPRGLDEAVIRLIPVIHYKAEENRESGERSFTECSVCLTEFREKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLSNRFQVDQILNSRPSSQDRRRYGENLNGEDEDFVVIELSTIGDDRGQNSNGTQERENPPREVSPSPRKIMEQKKKPCKFQKVTSMGDECIDTRGKDGQFSVQPIRRSFSMDSSGDRQLYMAVQEALKKQNREQASEVSSSSINEGCSSSSSGRVKRSFFSFGHGSSRSRSSVQPVYGDH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0471 415 MobiDBLite consensus disorder prediction 276 313 - -
Lele22g0471 415 MobiDBLite consensus disorder prediction 296 313 - -
Lele22g0471 415 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Lele22g0471 415 SUPERFAMILY RING/U-box 188 237 - -
Lele22g0471 415 FunFam E3 ubiquitin-protein ligase ATL6 149 237 - -
Lele22g0471 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 236 IPR013083 -
Lele22g0471 415 MobiDBLite consensus disorder prediction 364 415 - -
Lele22g0471 415 PANTHER RING-H2 FINGER PROTEIN ATL16 80 411 IPR044600 GO:0016567|GO:0016740
Lele22g0471 415 MobiDBLite consensus disorder prediction 368 409 - -
Lele22g0471 415 MobiDBLite consensus disorder prediction 278 295 - -
Lele22g0471 415 Pfam Ring finger domain 188 231 IPR001841 -
Lele22g0471 415 SMART ring_2 189 230 IPR001841 -
Lele22g0471 415 CDD RING-H2_PA-TM-RING 188 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0471 Lele-ChrLele22 2938924 2944251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0471 86 412 C3H Transcription Factor Family AT1G04360 52.125 5.42e-102 306