LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g0470	ATGGAGGCGTTTGGGTCGGGATCTAGAAGGGCCAAGGACGCGGAAGGTGGCAGAGATGTCCGGTACCGGGGAGTGAGGCGGCGTCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGGGAGGCAGGGCCAGAGGGTGTGGCTAGGGACTTTCAACACGGCGGAGGATGCCGCCAGGGCCTACGACCGAGCCGCTTACGCCATGAGAGGCCCATTTGCCATCCTCAACTTCCCGGATGAATACCCACTTTCGGCTGGCGGTGCTGACACCATGGCCAACTATCACTCTTCTGCTTCTTCCCCACCGAGTGGTAATGAGCCTGTAAAACAAGTGTTCGAGTTCGAGTATTTGGATGATAAATTGCTGGAGGAGCTTCTCGATTTTGAAGACAAAAAGATGACGGGGAATTGA	414	0.5773	MEAFGSGSRRAKDAEGGRDVRYRGVRRRPWGKFAAEIRDPGRQGQRVWLGTFNTAEDAARAYDRAAYAMRGPFAILNFPDEYPLSAGGADTMANYHSSASSPPSGNEPVKQVFEFEYLDDKLLEELLDFEDKKMTGN	137

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g0470	137	CDD	AP2	21	80	IPR001471	GO:0003700\|GO:0006355
	Lele22g0470	137	Gene3D	AP2/ERF domain	20	80	IPR036955	GO:0003700\|GO:0006355
	Lele22g0470	137	PANTHER	DNA-BINDING DOMAIN	15	130	IPR044808	GO:0003700\|GO:0009873
	Lele22g0470	137	SMART	rav1_2	21	85	IPR001471	GO:0003700\|GO:0006355
	Lele22g0470	137	Pfam	AP2 domain	21	71	IPR001471	GO:0003700\|GO:0006355
	Lele22g0470	137	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Lele22g0470	137	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Lele22g0470	137	ProSiteProfiles	AP2/ERF domain profile.	21	79	IPR001471	GO:0003700\|GO:0006355
	Lele22g0470	137	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele22g0470	137	SUPERFAMILY	DNA-binding domain	21	81	IPR016177	GO:0003677
	Lele22g0470	137	FunFam	Ethylene-responsive transcription factor 2	21	80	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g0470	Lele-ChrLele22	2938338	2938751	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g0470	18	133	AP2-EREBP Transcription Factor Family	AT3G23230	57.724	3.11e-41	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele22g0470		AP2	6.8e-16	CL0081