Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0418 ATGGATTCGGATCAAGGTAAGCTTTTTATTGGTGGGATATCGTGGGATACGACCGACGATAAGCTGAAAGATCATTTCAGCAACTACGGTGATGTTTTGCACACATCCGTTATGAGGGAGAAAAACACTGGGAAGGCCAGAGGCTTTGGATTCGTTGTATTCGCAGATCCTTCGATTCTTGATAGGGTTCTGGAGGAGAAGCACATAATCGATGGCAGAACGGTAGATGCTAAGAGGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCCCCTTCCAGGGCTGGAAATCCCAACTCTTATAGAAATTCTGGAAATGGAGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTACATTGACTGAAGAAATGTTTCGAGAGTATTTTGAGGCTTATGGTCTTGTTACTGATGTAGTGGTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCATAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCGGGTGCAAGTGGTCGTATGGGTGGTGGGGGAGGAGGTGGCAGTGGTTATCAGGGGTATGGGGCATCTGGTGGCAGCCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATGTGCAGCCTCCAAGCGCTGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATAGTGCTTCTGGGTACGGTTACGGTCCTGCTAATACTGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGTGCAAGCACTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCCAACATCCCTAATGCTGCTTATGCTGGTGGTCTGCCTGGTGCCCCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCTGGTTATGGATCTATGGGCTATGGGAATACTGCTGCTTGGGGTGCTCCAGGTGGCGGTGCTGGATCTGTTGGCAGCGGTCCTGGTTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGTTATGGAAATCAAGGGTATGGCTATGGTGGGTATGGTGGAAGTGATAGTTCTTTTGGGAACCCTGGCACATATGGTGCTGTTGGCTGGCGTTCCGGAAGTGCCCCAAACAGCTATGCTAGTGGTCCAGGAGGAAATGAACCACAAGGGAGTGGTGGCAACTACAATGGAAGCGGTTATGGTGATACAAATGAAAGTTCAGGATATGGAAATGCTGCATGGAGATCTGATCCTGCGCAACCATCTGGAAATGATGGGACTCCTCAGGCAAATGGTCCTCATGGTGGACAAGTTGGTTATGGCAGCAGCTATGGTGGTGCACAGTCACGGCAGGCCCAACAACAGTAA 1413 0.4919 MDSDQGKLFIGGISWDTTDDKLKDHFSNYGDVLHTSVMREKNTGKARGFGFVVFADPSILDRVLEEKHIIDGRTVDAKRAFSREDQQISAPSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEMFREYFEAYGLVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMGGGGGGGSGYQGYGASGGSQNAYDGRMDSGRYVQPPSAGGGFPPYGSSGYSASGYGYGPANTGMGYAGYGSYGGASTGYGGPAGATYGNPNIPNAAYAGGLPGAPRSSWPAQAPSGYGSMGYGNTAAWGAPGGGAGSVGSGPGSAPAGQSPSGAAGYGNQGYGYGGYGGSDSSFGNPGTYGAVGWRSGSAPNSYASGPGGNEPQGSGGNYNGSGYGDTNESSGYGNAAWRSDPAQPSGNDGTPQANGPHGGQVGYGSSYGGAQSRQAQQQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0418 470 MobiDBLite consensus disorder prediction 393 470 - -
Lele22g0418 470 MobiDBLite consensus disorder prediction 85 107 - -
Lele22g0418 470 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lele22g0418 470 MobiDBLite consensus disorder prediction 81 107 - -
Lele22g0418 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele22g0418 470 MobiDBLite consensus disorder prediction 220 239 - -
Lele22g0418 470 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Lele22g0418 470 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele22g0418 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lele22g0418 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 470 - -
Lele22g0418 470 MobiDBLite consensus disorder prediction 187 213 - -
Lele22g0418 470 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lele22g0418 470 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lele22g0418 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele22g0418 470 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lele22g0418 470 MobiDBLite consensus disorder prediction 393 446 - -
Lele22g0418 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele22g0418 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lele22g0418 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lele22g0418 470 Gene3D - 105 227 IPR012677 -
Lele22g0418 470 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0418 Lele-ChrLele22 2589524 2591488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0418 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 1.13e-10 62.0