Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0401 ATGGCAGCTTCTGCAGCTGCGGCTATAGGCTCATCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTCATCCAAGAACTTGTCATCTGAACCCCTCCTCAGAATTTCATCAAACCGCGTGTTGGTGTATGGGTCACTATCGCACTTGTGGGAACCACTTTCCCTTGATACTAATGTCAACAAGTTGTGGGTTTCAAGGGTTTCGGCACAAGAAGAGCTTGTAGGGGTCGATGAGATTGATGCTGGTTTAGTTGAGGAGAATGAGGAGGGAGAAAAGGAAGTGGTAGAAGAAGAAGGAGAGGCTGAAGAAGTCTCTGTCAACACTAAGCTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGCGATTATTCAGGATTATGCCAGCCCAGAACTCATTGAGGTTCTTTACCACAGAGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGTAGTGTCGAAGATTGCAATGCAGTGATAGAAAACCTTGATGGAACTGAATACTTGGGTAGAACCCTGCGAGTGAACTTCTCTGACAAACCTAAACCGAAAGAACCGTTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTGACAGAAGCTTTTCAAGAATATGGACATGTGGTTGGCTCTAGAGTGTTATATGATGGGGAAACAGGAAGATCCCGTGGTTATGGCTTTGTTTGCTATTCAACCAAAGCAGAAATGGAAACTGCCCTTTCATCCATGAATGGAGTGGAACTTGAAGGACGGGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCATAA 849 0.4441 MAASAAAAIGSSFSSSINTLKCLRSSKNLSSEPLLRISSNRVLVYGSLSHLWEPLSLDTNVNKLWVSRVSAQEELVGVDEIDAGLVEENEEGEKEVVEEEGEAEEVSVNTKLYFGNLPYSVDSAQLAAIIQDYASPELIEVLYHRETGKSRGFAFVTMSSVEDCNAVIENLDGTEYLGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGHVVGSRVLYDGETGRSRGYGFVCYSTKAEMETALSSMNGVELEGRAMRVSLAEGKRS 282
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0401 282 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 191 - -
Lele22g0401 282 Gene3D - 70 191 IPR012677 -
Lele22g0401 282 FunFam 28 kDa ribonucleoprotein, chloroplastic 192 282 - -
Lele22g0401 282 Gene3D - 192 282 IPR012677 -
Lele22g0401 282 SUPERFAMILY RNA-binding domain, RBD 196 281 IPR035979 GO:0003676
Lele22g0401 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 272 IPR000504 GO:0003723
Lele22g0401 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Lele22g0401 282 SMART rrm1_1 202 275 IPR000504 GO:0003723
Lele22g0401 282 SMART rrm1_1 111 184 IPR000504 GO:0003723
Lele22g0401 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Lele22g0401 282 PANTHER OS02G0815200 PROTEIN 53 280 - -
Lele22g0401 282 Coils Coil 89 109 - -
Lele22g0401 282 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Lele22g0401 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele22g0401 Lele-ChrLele22 2513666 2515810 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0401 110 280 Eukaryotic Initiation Factors Gene Family AT3G16380 30.645 1.43e-16 77.8