LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g0388	ATGTCTGGGAACAACATGGGTTGGGGTATGAATATGTTAGAGGAAGAAGGTTGGAGGAAGGGTCCTTGGACTGCTGAAGAGGACAGATTGCTTATTGAATATGTTAGGCTTCATGGTGAAGGCAGATGGAACTCCGTCTCTAGGCTTGCAGGATTGAAAAGAAATGGGAAAAGCTGCAGATTGAGGTGGGTGAATTATTTGAGGCCTGACCTGAAGAAGGGTCAGATAACACCTCAGGAAGAGAGCATCATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCGAGAAGCTTACCAGGAAGAACTGACAATGAGATTAAGAACTACTGGAGGACTCATTTCAAGAAGAAGGCAAAAAATTCTCCAGATTCTGCAGAAAAAGTGAAAAATCGCCTCATAAAGAGGCAACAATTTCAGCAGCAACAACAACAAATGCAGCAACAACAGCAGCAGCAGCAACTTCAATTCAACTTGGACATCAAAGGGATTATGGCTCTTCTGGAGGAAAATGATCATAGAGTAACTATGCCTTGTTTGTCTCAAATGAGGCAAGAAATGTATCAGAACAACATAGAAGAGCAAAATTGCTTCTACTCTATGCTCAATGGCAATGTCTCTGAACCAGAACCTTCAAATAATGATGATACTTTCTGGGATGGGCTGTGGAACTTGGATGATTTTCATGGAAATTTCAGTGCAGCAAGCAAAGAAAATCTACACAATTTAGTTGCTCCCTTCTGCTAG	756	0.422	MSGNNMGWGMNMLEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNSPDSAEKVKNRLIKRQQFQQQQQQMQQQQQQQQLQFNLDIKGIMALLEENDHRVTMPCLSQMRQEMYQNNIEEQNCFYSMLNGNVSEPEPSNNDDTFWDGLWNLDDFHGNFSAASKENLHNLVAPFC	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g0388	251	SUPERFAMILY	Homeodomain-like	17	114	IPR009057	-
	Lele22g0388	251	CDD	SANT	77	118	IPR001005	-
	Lele22g0388	251	Coils	Coil	139	159	-	-
	Lele22g0388	251	ProSiteProfiles	Myb-like domain profile.	68	118	IPR001005	-
	Lele22g0388	251	CDD	SANT	22	67	IPR001005	-
	Lele22g0388	251	Gene3D	-	20	72	-	-
	Lele22g0388	251	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	67	IPR017930	-
	Lele22g0388	251	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	68	122	IPR017930	-
	Lele22g0388	251	Gene3D	-	77	121	-	-
	Lele22g0388	251	FunFam	MYB transcription factor	77	158	-	-
	Lele22g0388	251	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	13	213	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele22g0388	251	SMART	sant	72	120	IPR001005	-
	Lele22g0388	251	SMART	sant	19	69	IPR001005	-
	Lele22g0388	251	FunFam	Myb transcription factor	20	72	-	-
	Lele22g0388	251	Pfam	Myb-like DNA-binding domain	20	67	IPR001005	-
	Lele22g0388	251	Pfam	Myb-like DNA-binding domain	73	117	IPR001005	-
	Lele22g0388	251	ProSiteProfiles	Myb-like domain profile.	15	67	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g0388	Lele-ChrLele22	2425978	2427002	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g0388	15	251	MYB Transcription Factor Family	AT3G24310	58.984	2.61e-90	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele22g0388		Myb_DNA-binding	1.5e-16	CL0123