Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0342 ATGACTGGCTTGAACTTTGCACGTGATACAGAAGAAAATATGGAGGATATGGAGATTGATCAAATTGTGGATGTTCCTGATACTCCTGATAGATTGACTGCTAGGCGTGTTGGTAAAAAATATGCTGGTAATCCTGATGTTTGTGTGAATGAGAAGGGAGAGAGGGTTCCCCGTGCTACTGAAAACAGTAAGTATGGAAGACCTTCCTTTTGTCTTTCAAAGAGCTCAAACGGGGTTGAAATGAATAACTGCATAGCAGCATCCTCATCAGATAATTCTTATGCTTCTCAAAATGCTCCCATATTAAGGAGGTCCCAAGGTGACAAATCTTTTAGCAAAGAGTTTGCATACACAGCTGGATCTGAAAAGATGGAGAAAGGGAAAAATATACGCCTTAAATTTCCTTCTAAATCATCTTCTAGTAGCTATGGGGGTGTTACTGTTTTTGATTTGACTGAAGAAAATGGACAGCCCCAAAAACTCAAACCATTTTTCTCACATCATGGATTGAAGGATAATGCAACTGACTCCAAGAAAGATGGGAAAGCAAGCATTGGGAACTCTCCTATATCTTGCATCCCTGATTCTTCAAATGCATCTAGCAATGCCTTACGAGGAAAGTGTAAAATAGATGATAAAACACATCTATGCTTGAATAAAACTGTTGATTGTGGAAAGAGTATTGATTTATCTGGTGATTCTCAGCCAAAAACTGAAAAGCAGGTGTCTTTGCCTCCTCGCGTTATAACCACCCCAAGATTCAGAGGGCAGAAGAGATTGGTGCGAAATGGTTGTATCTCACCTTATAATATTGCAGCTAGAGCAAAACAATCAGCTGAACAGAATGATGTTGAACAGAGCCATGCGGAGGATGATGTTTCTAGCAATACAACGTCCCACATGAGTATCAATGATATAGTTGCTGAAGAGAGAAGCAGTAACAGAGTGAAGGGAAAAGAATTATTTATCCACCCTTCAAGTGTGCATGATGCCAGAACTATCAAAACAGCTAGCAGTAGCCCTATGGATAATTATGAAGAGACCAATGGTACCAGTAATGCTATCAGAAATTCACATGAAAGCTTGGGGGGATCAGAAGGTTTGACAATAACACATAACCGCAGAACTACTCATTGGCCCTTGCATGATGTAACTGGGCATCGTTCAAGGAGAGGTGAAGATTCTGAAAGATTTATTGGCACACAATGTAGGAACAGAGTGGGTAGAAGAGACCCTGGGAGCAGTCAAAACACTATGGATGTAAGGTATCCTCTAGTAAATCATGCGACTCCTCTGATCATTCCTGATGCTGAACAGTCAACTAGACCTTGTAATACAGCAGACAAGCTGACTAAAAGGCAAAGGAAAAACGCATCAACCTCCAGAAATCTTAATCCAGAGATTATGATTCTTGATTCACATGGGGAATCATCAAATTTAAGCTCACCTAGGAGCTCTGAAGTGGTTGAGCAATTACCTGGAACAACATACACCAACAGAGCACCCCATGATTCCGATGACATGAATCCTAGTGACTCAGACACTCGGGCTAGACAGGTAGAAGCAGATGAGATATTGGCCCGTGAACTTCAAGAACAACTATATCATGAGGATTCTTTTGATGGGGGAGAGCATATTGATGAACATTTAGCGTGGGCATTGCAACATGAGGAGGAACTTCTGCATACATCTATGGAGAGTCACCATATTTCACACCCTAGATTGTCAAGGGCAGCCTCAAATAGACAGCCTCGTTCACGGTCTCATCAAAGTCCTACAAATAGAAGGAGAGCCGTGCCTCATGCCCCTCCCTCTAATAGAGTGTCACAGTTGAGGAGTCGCTTTTTAAATCGGTCTTCAGTGCCTGCCATCCCAACCAGAGGAAGGCGTCTTCGGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTGGAGGATGCAGTAGGGGATATTAGTGACATGGGAATTGCTGAAGACATGTTTCAAGCTCATCGAGACTTCAATGAAAATGATTATGAAATGTTATTGGCCCTTGATGAGAACAATCATCAACATGCTGGTGCATCTGTCTATCAGATCAATAATTTGCCGCAGTCCACTATACAGACTGACAACTTCCAAGAGGCGTGCGCCATATGTCTTGAGATTCCAGCTATGGGAGAAACCATTCGCCATCTTCCTTGTCTGCATAAATTTCACAAAGATTGTATTGATCCTTGGCTCCGTAGAAGGACCTCGTGCCCAGTGTGCAAGTCATCTATCACCTAA 2283 0.4214 MTGLNFARDTEENMEDMEIDQIVDVPDTPDRLTARRVGKKYAGNPDVCVNEKGERVPRATENSKYGRPSFCLSKSSNGVEMNNCIAASSSDNSYASQNAPILRRSQGDKSFSKEFAYTAGSEKMEKGKNIRLKFPSKSSSSSYGGVTVFDLTEENGQPQKLKPFFSHHGLKDNATDSKKDGKASIGNSPISCIPDSSNASSNALRGKCKIDDKTHLCLNKTVDCGKSIDLSGDSQPKTEKQVSLPPRVITTPRFRGQKRLVRNGCISPYNIAARAKQSAEQNDVEQSHAEDDVSSNTTSHMSINDIVAEERSSNRVKGKELFIHPSSVHDARTIKTASSSPMDNYEETNGTSNAIRNSHESLGGSEGLTITHNRRTTHWPLHDVTGHRSRRGEDSERFIGTQCRNRVGRRDPGSSQNTMDVRYPLVNHATPLIIPDAEQSTRPCNTADKLTKRQRKNASTSRNLNPEIMILDSHGESSNLSSPRSSEVVEQLPGTTYTNRAPHDSDDMNPSDSDTRARQVEADEILARELQEQLYHEDSFDGGEHIDEHLAWALQHEEELLHTSMESHHISHPRLSRAASNRQPRSRSHQSPTNRRRAVPHAPPSNRVSQLRSRFLNRSSVPAIPTRGRRLRFPVDMDFDMRLDILEALEDAVGDISDMGIAEDMFQAHRDFNENDYEMLLALDENNHQHAGASVYQINNLPQSTIQTDNFQEACAICLEIPAMGETIRHLPCLHKFHKDCIDPWLRRRTSCPVCKSSIT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0342 760 MobiDBLite consensus disorder prediction 165 179 - -
Lele22g0342 760 MobiDBLite consensus disorder prediction 180 198 - -
Lele22g0342 760 MobiDBLite consensus disorder prediction 457 504 - -
Lele22g0342 760 Pfam Ring finger domain 714 756 IPR001841 -
Lele22g0342 760 SUPERFAMILY RING/U-box 704 759 - -
Lele22g0342 760 PANTHER SI:CH211-59O9.10 435 760 - -
Lele22g0342 760 MobiDBLite consensus disorder prediction 432 518 - -
Lele22g0342 760 MobiDBLite consensus disorder prediction 574 588 - -
Lele22g0342 760 ProSiteProfiles Zinc finger RING-type profile. 715 756 IPR001841 -
Lele22g0342 760 FunFam RING/U-box superfamily protein 680 760 - -
Lele22g0342 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 760 IPR013083 -
Lele22g0342 760 CDD mRING-H2-C3H2C2D_ZSWM2 715 756 - -
Lele22g0342 760 MobiDBLite consensus disorder prediction 164 198 - -
Lele22g0342 760 SMART ring_2 715 755 IPR001841 -
Lele22g0342 760 MobiDBLite consensus disorder prediction 565 609 - -
Lele22g0342 760 MobiDBLite consensus disorder prediction 277 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0342 Lele-ChrLele22 2151706 2155269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0342 466 760 C3H Transcription Factor Family AT1G04790 44.728 1.03e-69 239