Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0330 ATGAGTACTTCAGATGAAGAACGCTCTGTTATAGGAAGCAAGGCAGAAATAGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTCTATAGTTATGCTCCAAACGAAGAGGACCCTATTGTCATATCTGTTCCATTTCCATTGGTGAATGGCAAGCCACAATCAGTATGTGTTGGCCGTACTGCTGTAGATGTAATAACGATCAAGAACACCACCAATGAACCAGTGGAACTGTGGAGTGTTCATATTTTTGCTTCAAGTCCTGAGGACTGTTTCACGCTTTCTCTGATGGAACCTCCATCAGCAAATTTAAGTGCAGATAGCATTCAAGGTTTTCTAGAGTCTTTTTCTTTGGAGGACAGGATGCTTCAACCTAATGAGATTTTGAAAGTGTGGCTGTCTTGCAAAACAAAGGAAATGGGATTGCACACCACAATTGTGTATGTTGATGCAGGGGATGCAAGAATAGAAAGGACAGTTTTTCTCTTAGCTGAAGACAAAATCTCCCAGTCTTTGGCTTCCAAAAAGCCTTATTCAAAAGGAAGAAAGAAAGAAAAATTTGTTGTAAATACTTTTGTTGCTGGTACACGACCTAGGAGGAAGGGAAATCGTGCACACAAGAACTGGCTTCCAACATATGACATCCCCAAGGAAACAAGAGACATGCTGGAGAGCAATCAGATCCCTGATGCTATTGAAAGAGGTCTTACAAAGAGGAGTTATGCTTCTTTTTTCAAAACATTAATTATGATGGAAGAGCTACAATTGGAGGAAGACATGAGGACCTATGATATGGAATGCGTAACTATGAGGAAAAAGGCGAATCAATCCTTGTCATTGGAGGTTCCAGGGCTAGCTGAGAGAAGGCCATCACTGGTTCATGGGGACTTTATTCTTGCCAAATTAGCCTCTGAACATGATAATGATAACGTGCCTGCTTACCAGGGTTTTGTCCACCGTGTTGAGGCTGACGAAGTACATTTGAAGTTTGATCCTCAATTTCATCTTGTCCACAGAGATGAAGACGTCTACAACGTTCACTTCACATATAATAGGCTCAATATGAGACGGTTATATCAGGCAGTTGAGGCTGCAGAAAACCTAGGAAGTGAATTCCTATTTCCGCATGAGACATCTAGAAGGAGGCGCATTGAAACATCTCATTTGGTTCCTATTTCTGGTAATATTAATGAGGAGCAGATGCTTGCAATCAAGAAGATTCTTGGATGCAAAGGTGCACCTCCTTATCTGATTCATGGTCCTCCAGGTACAGGAAAGACTAGTACAATAGTCGAAGCAGTCCTCCAACTCTACAAAAATCATAGGAAAGCTCATATTCTCATCTGTGCACCCTCAAATAGTGCTGCAGACTACTTACTTGAGAAACTCCTTGGTCAAAAGGCTGTCGAATTTCGAGATGAGGAAATATTTAGGCTTAATGCATCTACGAGGCCTTATGAGGAAATCAAATCTGAGCTTAAGCGCTTCTGCTACTTCGATGAGGGTGTGTTTAAATGCCCTCCAGTCAGTGCTCTAATGCAATATAAGATCATAGTATCAACTTATATGAGTGCTTGTCTTCTTTATGCTGAAGATGTCATTCGAGGTCACTTTTCACACATTTTCTTGGATGAGGCTGGACAAGCTTCAGAACCAGAAACCATGATCCCTATATCTCATCTCTGCAAAAGGGAGACTGTTGTCATTGTTGCCGGAGACCCAATGCAGTTGGGTCCAGTAATATATTCCAAGGAATCTGAAAGCAATGGATTGGGGAAATCATACTTGGAAAGATTGTTTGAATGTGAATTATACTCCTATGGAGATGATAATTATTTAACCAGATTGATTAGAAACTATAGATGTCACCCACAAATATTACATCTCCCTTCCAAGCTGTTTTATGAAGAAGAATTGATTGCATGCAGGGATGATAATAGTTTTTCGTTGCTGAATGAAGACTTCATCCCAAATAAGGAGTTCCCCGTTCTCTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAGTAATCCATCATGGTTCAACCGAATTGAAGTGAGTAAGGTTATAGAACTAGTCAAGAAACTTACAAACGATGGAAACATGAAGGAGGAAGACATTGGGATTATAACACCATATAGGCAACAAGTACTTAAAATAAAGCAGACACTTGAAAGTATAGATTTGCCAGAGATTAAAGTTGGAAGTGTTGAGCAGTTTCAGGGACAGGAGAGACGAGTTATTATAATATCAACCGTTCGCTCAACAATCAAACATAATGACTTTGACAGAGTACACTGTTTGGGATTCCTGAGCAATCATCGAAGATTCAATGTTGCTATAACCCGTGCCATATCACTGCTGATTATTATTGGGAATCCTCACATAATCTCTCGGGACTACTATTGGCACAAACTGTTGTGGCATTGTGTGGACAATTCATCTTATCTTGGTTGTTCGCTTCCTGAGAGACTGGAGGTTCAGGAGGACTCTGGCTTCAGAAATTTCCAAGAAAACGAATTGCCCTCTGAAGATGTGGAATGGGGTCAAGATCCACCTCCATCTGATTCGGAGTTGCCTAAACCAGCTGCTACTGATGAAGCTGAATGGTCTGATGGTTGGAAGTAG 2628 0.4087 MSTSDEERSVIGSKAEIGFLDFEEEKSVYSYAPNEEDPIVISVPFPLVNGKPQSVCVGRTAVDVITIKNTTNEPVELWSVHIFASSPEDCFTLSLMEPPSANLSADSIQGFLESFSLEDRMLQPNEILKVWLSCKTKEMGLHTTIVYVDAGDARIERTVFLLAEDKISQSLASKKPYSKGRKKEKFVVNTFVAGTRPRRKGNRAHKNWLPTYDIPKETRDMLESNQIPDAIERGLTKRSYASFFKTLIMMEELQLEEDMRTYDMECVTMRKKANQSLSLEVPGLAERRPSLVHGDFILAKLASEHDNDNVPAYQGFVHRVEADEVHLKFDPQFHLVHRDEDVYNVHFTYNRLNMRRLYQAVEAAENLGSEFLFPHETSRRRRIETSHLVPISGNINEEQMLAIKKILGCKGAPPYLIHGPPGTGKTSTIVEAVLQLYKNHRKAHILICAPSNSAADYLLEKLLGQKAVEFRDEEIFRLNASTRPYEEIKSELKRFCYFDEGVFKCPPVSALMQYKIIVSTYMSACLLYAEDVIRGHFSHIFLDEAGQASEPETMIPISHLCKRETVVIVAGDPMQLGPVIYSKESESNGLGKSYLERLFECELYSYGDDNYLTRLIRNYRCHPQILHLPSKLFYEEELIACRDDNSFSLLNEDFIPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVIELVKKLTNDGNMKEEDIGIITPYRQQVLKIKQTLESIDLPEIKVGSVEQFQGQERRVIIISTVRSTIKHNDFDRVHCLGFLSNHRRFNVAITRAISLLIIIGNPHIISRDYYWHKLLWHCVDNSSYLGCSLPERLEVQEDSGFRNFQENELPSEDVEWGQDPPPSDSELPKPAATDEAEWSDGWK 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0330 875 CDD SF1_C_Upf1 621 810 IPR041679 -
Lele22g0330 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 807 IPR027417 -
Lele22g0330 875 Pfam AAA domain 395 491 IPR041677 GO:0004386
Lele22g0330 875 Pfam AAA domain 511 583 IPR041677 GO:0004386
Lele22g0330 875 MobiDBLite consensus disorder prediction 839 875 - -
Lele22g0330 875 Pfam AAA domain 591 794 IPR041679 -
Lele22g0330 875 Gene3D - 620 823 IPR027417 -
Lele22g0330 875 PANTHER CANCER/TESTIS ANTIGEN 55 120 378 - -
Lele22g0330 875 FunFam Probable RNA helicase SDE3 344 489 - -
Lele22g0330 875 Gene3D - 317 606 IPR027417 -
Lele22g0330 875 FunFam Probable RNA helicase SDE3 620 819 - -
Lele22g0330 875 CDD DEXXQc_Helz-like 396 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0330 Lele-ChrLele22 2022824 2028961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0330 394 551 Core DNA Replication Machinery Family AT1G08840 34.375 1.34e-09 60.1