Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0278 ATGGCTCAGCTACAGAGCCAACAGCAGCAGCAACCACCCATTGATCATGCCCAGAAGACCAAGACTCTCATTTGTGCTCTCAACCTTGTCTCCCGTAACCTCCCTCTTCCTCCTGATCTTTTCAGCACTGTTTCTTCCATCTATCACGGCGCTGAAGATGCTTCCAGTGATGACCGTGAAAGCGAGGTCCCTGATGGGAGTGGGGGTGGAGCCGGATCTGTGGAGAAACAGGTGGATGCCCATGTTGACAAGGTTTTGGTAGGCGTTTTACCTGAAAATTTTGTTCAATTTTGTGCTGTGGTGTCTGATTTTTGGGGTAATTGGCGGAGAAATTCTAGAGAAGATTTGTTGACGAATCTTGAAGATGCACTAGTGAAACAACGACCAAGTTGTGTGTCAGGTTACAAATTGGAGAAAGAAATGGAAAGGCATTATAAAAGTCTGATTCAGCATCGATTAAATGAACTTGAAGGATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCTTGCTTGAACTGTATGGACTGAAGTGGGGAGCTTCTGCTGTTTCTGTGGCTTTTGAAATTTTATTGAGTTTGGCCAAGTTGTGCCTCTGTCAGAAGCTAGCAGAGTTGCGAAGGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTTCATATCCTGACAGGCAGTTGTTTGATTGGGGAATGATGCGGTTGCGTCGTCCTATGTATGGTGTTGGAGATCTGTTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCTGAGTGTCTGAAATGGACTAAAATTTGCTTTTTACTTCTCTTGTCTCTAAAACCTCCAATGCAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAGATAGAGACCAGAAAAAGAAAATTTTTTGCGGAAATACTTAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGGGTCCAGGCGTGGCATGGAAGGCAAAGACAACGTGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTGAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAGCAGATGGCATTGAACCTTTGGAAGACTCGGAAGCTGAACTACCAGAGTCAGTTGGTTCGAAGAATGGAATATCTAAGGAATCACCTCCTGAGGAATATGCTGATATGATAGACTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACAGAGCAACCTTCTATTCTCCAAGGTGGAGAGTTAAGATCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAACCTAAATGGAATTTTGGCGGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGGTGTGACCGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCGACATGGGCTCCAAGCATTACAACTGTTCTTTATGATGGACGGCTGGATGAGCGAAAAGCAATGAAAGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTCTGATAACACATTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTCACTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTTGACTCTGGCTATAACATCCAACGTAGACTCCTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAGCATTTTTAACTCGGTTCAAAATTTTGAGGACTGGTTTAATGCCCCATTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGCCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATACTCAAATGTGATATGTCATCATGGCAGAAAGTGTATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGCACAATGGCACTGGGAAATCCAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAACTTAATATGTGGAACAAGGATGAGATTGTCCGAGCATCAGGGAAGTTTGAACTCCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTATGTTCTCACAAATGACACGTCTCATGGATATTCTTGAAATTTATCTGCGGCTTCATGATTTCAAGTTTATTAGACTTGATGGCTCAACAAAAACGGAGGAAAGAGGGACTCTACTGCGACAGGTTTTCGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCGGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGACCTCGTCTTATGGAAGAACATGAAGTGCCAGATTGGGTATACCCTGCAGCAGCTAACAAGGATGACAAGGTCAAAGGTAATGCTTTTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAGGTGGTATATGCTGATACTTTAAGTGATCTACAATGGATGAAAGCTGTGGGGAATGGGGAAGACGTGTCAAAGTTTTCAGTGAAAGGGAGAAGAAGAGACCACCTGCCATCGGACACCAACACAATTGCCAGTGATAATGTTGGGGCGGAAGAAAGTTTTTCTGAATTACAAAATGAAAGCTTCTCCATGGCAAAAGAGAGGTCGAATGAAGACTCTTTCCATGTGACCCCTGGTCCTACCCCAAAAAGACTCAGGCTTGAAGGAATAAACACAGAGAAACATGAATACGAGGGCGTCAGAGGAAGTGGTTTGAATGAGCATATGTTTACCTGGAATACCCATAGAAAGAAAAGATCAAGCGGTCTTACTCACAGCTCATCGTTGTCTGATTCTAGGGGGCAGAGTTCTAATGGAAGAGAAAATTGGAGCTGA 3393 0.4271 MAQLQSQQQQQPPIDHAQKTKTLICALNLVSRNLPLPPDLFSTVSSIYHGAEDASSDDRESEVPDGSGGGAGSVEKQVDAHVDKVLVGVLPENFVQFCAVVSDFWGNWRRNSREDLLTNLEDALVKQRPSCVSGYKLEKEMERHYKSLIQHRLNELEGLPSSRGEDLQTKCLLELYGLKWGASAVSVAFEILLSLAKLCLCQKLAELRRKVRSDVSAEYWLNVKCSYPDRQLFDWGMMRLRRPMYGVGDLFAMDADDQLRKKRDAECLKWTKICFLLLLSLKPPMQRLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQADGIEPLEDSEAELPESVGSKNGISKESPPEEYADMIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWAPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLHNGTGKSKSLQNLTMQLRKCCNHPYLFVGELNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFIRLDGSTKTEERGTLLRQVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRPRLMEEHEVPDWVYPAAANKDDKVKGNAFGSVTGKRKRKEVVYADTLSDLQWMKAVGNGEDVSKFSVKGRRRDHLPSDTNTIASDNVGAEESFSELQNESFSMAKERSNEDSFHVTPGPTPKRLRLEGINTEKHEYEGVRGSGLNEHMFTWNTHRKKRSSGLTHSSSLSDSRGQSSNGRENWS 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0278 1130 MobiDBLite consensus disorder prediction 1097 1130 - -
Lele22g0278 1130 SMART SnAC_2 938 1000 IPR029295 GO:0042393
Lele22g0278 1130 MobiDBLite consensus disorder prediction 398 451 - -
Lele22g0278 1130 MobiDBLite consensus disorder prediction 51 74 - -
Lele22g0278 1130 FunFam Chromatin structure-remodeling complex protein SYD 472 715 - -
Lele22g0278 1130 PANTHER SNF2/RAD54 HELICASE FAMILY 286 851 - -
Lele22g0278 1130 Gene3D - 716 848 IPR027417 -
Lele22g0278 1130 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 659 IPR014001 -
Lele22g0278 1130 MobiDBLite consensus disorder prediction 434 450 - -
Lele22g0278 1130 Pfam SNF2-related domain 484 772 IPR000330 GO:0005524|GO:0140658
Lele22g0278 1130 Pfam Snf2-ATP coupling, chromatin remodelling complex 934 1000 IPR029295 GO:0042393
Lele22g0278 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 706 IPR027417 -
Lele22g0278 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 899 IPR027417 -
Lele22g0278 1130 Coils Coil 285 305 - -
Lele22g0278 1130 CDD SF2_C_SNF 782 851 - -
Lele22g0278 1130 Gene3D - 472 715 IPR038718 -
Lele22g0278 1130 MobiDBLite consensus disorder prediction 1109 1130 - -
Lele22g0278 1130 SMART ultradead3 477 670 IPR014001 -
Lele22g0278 1130 Gene3D - 851 947 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0278 Lele-ChrLele22 1679966 1688214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0278 502 775 RAD5 or RAD16-like Gene Family AT5G43530 28.750 8.64e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele22g0278 SNF2_N 1.2e-68 CL0023