Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0272 ATGGACGCCTTCTCACCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTACTTGTTTTCTTTCTCACTCGCAGAATCATACCTTCTTCTTTTCCATGTATCACACCAACCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCGTTTTAAATACGTCTTCCTTGACCCACGAAGCAGTTGATGAAGTTGGTTCTCCCACGTTAAGGGAAATATGCGAAGCCCATGTTCCCCAGCATATATTAGACAGGATGGAAGAGATTGGATATTTCATGCCTACAGATGTCCAGAGGCAAGCGTTGCCTTCTCTTTTATCTGGTTGCGATGGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTTGCATACCTACTTCTAATATTTTCCGTCATAAACACTGCAAAATCTGCTGTGCAAGCTCTTGTTGTGGTGCCCACCCGCGAACTTGGCATGCAAGTTGCCAAAGTTGCCAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGGAGGAGCACAAGTCATGTACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATAATTGAAAAACAATTTTTAAAGCTTGAAACTGTGCGGGTGTTAGTGGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAGCTTTTAACCTTGTATTCATCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGCCCAGTTGAGCCCATGCCACCACGCCTACATCATAGATTTGTAGTATGTCATAGGTACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGTATCATATTTGCCAGTGAACAGTCTAAGAGGTCAAAACAGGCAGGAAATGTTCCATCGACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATATCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAGATAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCAGAAATGTCTCATATTTACAACTTTGATCTGCCTAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTGCTGTTACCACTATCATCGTTCCAGAGGAGCGCTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1422 0.4311 MDAFSPAQLLPISFEKPTPTCFLSHSQNHTFFFSMYHTNPGLRFISKFRTPQSVLNTSSLTHEAVDEVGSPTLREICEAHVPQHILDRMEEIGYFMPTDVQRQALPSLLSGCDGILHAQTGSGKTLAYLLLIFSVINTAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEEEHKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIEKQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPPRLHHRFVVCHRYKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNVPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEIRKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCAVTTIIVPEERFVLQKYENELMFNCEELTL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0272 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 439 IPR027417 -
Lele22g0272 473 Pfam DEAD/DEAH box helicase 98 271 IPR011545 GO:0003676|GO:0005524
Lele22g0272 473 Gene3D - 301 471 IPR027417 -
Lele22g0272 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 473 IPR001650 -
Lele22g0272 473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 287 IPR014001 -
Lele22g0272 473 Gene3D - 47 283 IPR027417 -
Lele22g0272 473 SMART ultradead3 93 307 IPR014001 -
Lele22g0272 473 CDD DEADc 85 280 - -
Lele22g0272 473 SMART helicmild6 353 437 IPR001650 -
Lele22g0272 473 CDD SF2_C_DEAD 304 435 - -
Lele22g0272 473 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 74 464 - -
Lele22g0272 473 Pfam Helicase conserved C-terminal domain 316 435 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0272 Lele-ChrLele22 1628769 1632280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0272 62 456 Eukaryotic Initiation Factors Gene Family AT3G13920 25.743 8.71e-29 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0272 22 1628769 1632280 Lele23g1792 23 21467879 21471069 hybridization
Lele22g0272 22 1628769 1632280 Lele24g0259 24 1629593 1633137 hybridization