Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0271 ATGGTTCGGAAGCCCTGTCTTCTCCTGTCAATTGGTGGTGAACAGAGGAAGCTTGCTAATGCGATGACCAGAAGGGCTTCAAGTTTAACAGTGGAGGCAGTCGTGGGCAGTGATCCAAGGCAGCTTCCAACTCCAACTACAGGAGGCTCTTTCTTTCCTGGCCTCCATCTTCCTCTTCTCCATCTCAAGTCTCCTTCCTTGTGTTTGCTATCAATGGATAATTTCACCTCTTCCTCTTCTCTTCCTCCTCCTCCTCCACCTCTATCCCGCATTCTCCCCACATCGGCGTCATCCTCTTCCGCAGCTTTCGACGACTGTTCCGAGGACTCCTGCAGTGTTTGTCTAGAGCCCTTCAGCACCGATGACCCTGCTACTATAACAAATTGCAAACACGAATATCACCTGCATTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGCCCAATCTGTTGGCAGATACTTGTCTTGAAAGACCCTGCCAACCAAGAACTTCTAGCTGCAGTGGAAGCTGAAAAACGCATAAGGTCAAGAAGCTCATATTCATCTGCATTCCCATATCCTCGTATCCCCATTGAACAGCATAGTGCGGAACATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCACATTATTTTCATCGAAGGGAAATGCAAAGATCATCTGTTGTGGGTCCATCTCGGATTCCTTTAGTTGACTCTTCATTGCATGTCTCTGGGCTGCAACCGGTGTATACAACTTCACCTTCTGAAGGTAGTTCACCTAATTCTGGTGCTGCTGCAGATGTTCAACCTCCACCATCTGCCCCTTCCTCTGTTGAAGCGATTACAAGAAATTCCACTCCTGAAACTGATGACCCTTTCAAAGTCAGAGTTCTTTATAGCCAACCACCACCTGAGAGTGCGAGAAGACTGAACACTTCTGAGATGTTTACCTTCCCCCAGTCCATCAAGACCAAATTTTCTGCTGCTTCAGCCAGATATAAAGAATCTATTTCAAAAAGTACCCGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGCGTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCTGGCATTGCCGGTGTTGCACGGATGATTGAACGCCTTGAACTCGCCTCAAAACGGGCTACTGATTCTCCTCCCATGCCTAGCTCTACCGAGGGAACTTCTGGCTTCCCCTCTAAAGGAAAGACTGTCCAAGAAAATGGTAGTGTGCAGTCTCTTCACTCTGCTGTTAATGAAGAGAGTGGAGTTGTCATTCATGATGTTAGATCAGGTCCATCTGCACAGGTTTCCAGCGCGGCTGTTGGTCCTGTAGACTATCCTCATCCACATGTTCAGGTTAATCCATCCATCTAA 1419 0.4672 MVRKPCLLLSIGGEQRKLANAMTRRASSLTVEAVVGSDPRQLPTPTTGGSFFPGLHLPLLHLKSPSLCLLSMDNFTSSSSLPPPPPPLSRILPTSASSSSAAFDDCSEDSCSVCLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQILVLKDPANQELLAAVEAEKRIRSRSSYSSAFPYPRIPIEQHSAEHDDSCSDDSDFDEQIMQHLVAAASRAHYFHRREMQRSSVVGPSRIPLVDSSLHVSGLQPVYTTSPSEGSSPNSGAAADVQPPPSAPSSVEAITRNSTPETDDPFKVRVLYSQPPPESARRLNTSEMFTFPQSIKTKFSAASARYKESISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLELASKRATDSPPMPSSTEGTSGFPSKGKTVQENGSVQSLHSAVNEESGVVIHDVRSGPSAQVSSAAVGPVDYPHPHVQVNPSI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0271 472 MobiDBLite consensus disorder prediction 394 425 - -
Lele22g0271 472 MobiDBLite consensus disorder prediction 449 472 - -
Lele22g0271 472 SUPERFAMILY RING/U-box 104 158 - -
Lele22g0271 472 MobiDBLite consensus disorder prediction 256 300 - -
Lele22g0271 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 167 IPR013083 -
Lele22g0271 472 Pfam Ring finger domain 109 151 IPR001841 -
Lele22g0271 472 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 72 160 - -
Lele22g0271 472 FunFam E3 ubiquitin-protein ligase RHF1A 96 163 - -
Lele22g0271 472 SMART ring_2 111 151 IPR001841 -
Lele22g0271 472 MobiDBLite consensus disorder prediction 398 425 - -
Lele22g0271 472 MobiDBLite consensus disorder prediction 256 275 - -
Lele22g0271 472 ProSiteProfiles Zinc finger RING-type profile. 111 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0271 Lele-ChrLele22 1623079 1627637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0271 108 162 C3H Transcription Factor Family AT4G00335 45.455 5.63e-13 65.9