Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0259 ATGGGAAATCTATGGAGTAGCAGAAGAAGAAACAATTACTTTCACTATCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCATCTACCACCTCCTTATTACTATTCCGCTGAATCCCTTCTTCCTCCTCCCCCCGTCCCACCTCAGCCCCAGGGCTATTATCTGACCAATTCTTACGGCAATACGCCTCCTCTCCCTCCGCCGCCACCGCAGCCGTCTCATCCTCACGCCCTTCCATTCAGTTACCCCAATGGGCACAGCTATTGCCCCAACTATGGCAATTCTACGACGGGTCGTTTTCAGTACCAACCTGATTATGTAAATCAGGGTACTAGTGGCTGGCCTCCGATTCGTCCTCCTGTTGCTCCTGCCAATCCCCCGCCCTATGTCGATCATCAAGCCGCCAAGAAGGTCAAAAATGATGTCAATGTGCATAAAGATACTTTGCGGCTAGAGTTGGATGAGCACAATCCTGACCAGCACTTGCTTTCATTTGTTTTCGATGCTCTGTATGATGGGAGCATTTCTATAATCTACTTTGCCAAGGAAGTAGAAACATGCAAGTTCATTCCACTGTTTCCTGAAATTGAGCCAGTCAGAATCCCTTTTCAGAAAGGAGCTGGACAAAAGTTTTGTCAGCCTTCAGGAACTGGCATTGACTTGGGCTTCTTTGAGTTGGATGATCTCTCAAAACCCTCACAAGGAGAAAATGTCTTTCCCCTTGTGGTATGTGCTGAAACATATTCGAGAACTCTTCCAGCAGATGAAAACTTTGATGATTCGATGGCCGATGTATCACCTAATAAGCAGATCACTCAAGCTGTTATTGAGAAAAGCAATGGTAGTGGTTCTTTCCAGGTAAAAGTAATTAGGCAGATTTTGTGGATTGATGGAGCCCGTTATGAATTACGAGATATATATGGAATTCGAGGCTCAGCAGCAGCAGATTTCAATGACAATGATCCTGAGAAGGAGGAGTGTGTGATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGCGCCAAAGCTTTGAGGCTTCAATCAAATAAATGCCCTATATGCCGTCAATCCATTGAGGAACTTATAGAGATCAAGATAAATAATGGTAACCAATGA 1146 0.4572 MGNLWSSRRRNNYFHYPPPPPPPPPPHLPPPYYYSAESLLPPPPVPPQPQGYYLTNSYGNTPPLPPPPPQPSHPHALPFSYPNGHSYCPNYGNSTTGRFQYQPDYVNQGTSGWPPIRPPVAPANPPPYVDHQAAKKVKNDVNVHKDTLRLELDEHNPDQHLLSFVFDALYDGSISIIYFAKEVETCKFIPLFPEIEPVRIPFQKGAGQKFCQPSGTGIDLGFFELDDLSKPSQGENVFPLVVCAETYSRTLPADENFDDSMADVSPNKQITQAVIEKSNGSGSFQVKVIRQILWIDGARYELRDIYGIRGSAAADFNDNDPEKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKINNGNQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0259 381 MobiDBLite consensus disorder prediction 14 50 - -
Lele22g0259 381 FunFam probable E3 ubiquitin-protein ligase LOG2 309 375 - -
Lele22g0259 381 Pfam Zinc finger, C3HC4 type (RING finger) 323 370 - -
Lele22g0259 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 380 IPR013083 -
Lele22g0259 381 ProSiteProfiles Zinc finger RING-type profile. 326 365 IPR001841 -
Lele22g0259 381 MobiDBLite consensus disorder prediction 1 78 - -
Lele22g0259 381 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 325 365 IPR045195 -
Lele22g0259 381 PANTHER MAHOGUNIN 1 375 IPR045194 GO:0061630
Lele22g0259 381 SMART ring_2 326 364 IPR001841 -
Lele22g0259 381 MobiDBLite consensus disorder prediction 60 76 - -
Lele22g0259 381 SUPERFAMILY RING/U-box 320 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0259 Lele-ChrLele22 1546619 1549914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0259 47 381 C3H Transcription Factor Family AT3G06140 51.585 2.24e-96 290