Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0224 ATGAATGCCACTGTAAATAGAAAGATTGTTCATAAGCTTTTTAAGGTTCGTTTAGGTCTTCTTCCGAACATCACATCTCCTTTTCGAAAAATGGGTTGTGTCCACGGCAAGTGTTGTAGCCGCTACCCGCCGCCGTCGGAGGGTGGTTCTGTGAACCGCCAAGAATTCGGTCCTTCCAGTTTCCAGCCGAAACACATACTTACTCAGAAATCATTGGAGTCTATTCCCGTTCCGTCCCACAACTTCACTTTGGAATACTCCGTTCTTACGCAGAGAGGATATTACCCTGACACGCCAACCAAAGAAAACCAAGATAGTTACTGCATTAGGACACAAATTCAAGGCAACCCAAGTATACATTTCTTCGGTGTCTATGATGGGCACGGCCAATATGGTAGCCAGTGTTCGAACTTTGTTAAAGATAAGTTGGTAGAGACCCTATCAAATGACCACTCTTTGTTGGATGACCCTGTTAAAGCATATGCTTCAGCATTTGTATCAACTAATCAAGAATTGCAAAATTCTGAGATTGATGATTCTATGAGCGGCACTACTGCAATCACAGTGCTTGTTATTGGAGACGTTCTATATGTTGCTAATGTTGGTGATTCGCGAGCAGTTTTAGCAGTTAAGGATGGGAACCGCATTGTTGCTGAGGACTTGTCCTCTGATCAGACACCGTTCAGAAGAGATGAATGTGAGCGAGTGAAGCTTTGTGGGGCAAGGGTGCTGAGTGTTGATCAGGTAGAAGGGCTTATGGATCCAAATATTCAGACTTGGGGTGATGAAGAGAGCCAGGGTGGTGATCCTCCCAGGTTATGGCTTCCGAACGCGATGTATCCCGGAACCGCGTTTACAAGGAGTGTAGGGGATAGTTTAGCAGAGACCATCGGTGTCATTGCTATTCCAGAGGTGTCAATGGTTCGGCTCACGCCTAATCATCCATTTTTTATCGTTGCAAGTGATGGCGTGTTCGAGTTCCTATCTAGCCAAACTGTTGTTGATATGGCGGCAAGCTATACGGATCCCCGTGATGCATGTGCTGCAATTGCTGGGGAATCATATAAACTATGGTTGGATCACGAGAGCCGAACAGATGATATAACAATTATCATTGTTCATATAAAAAGCCTGTCTAATTCAGTTACACGTGTGGCATCAAGTGAGATCAATGTTAGTGCTTTAGCAAGGGCCAAGTCCAAGAGAGGAACTTCCGAGATATCTCCAACCACATCCGATGTTCATCGTTCCGTGGGGAATGACTTGTCTCATTTACAGTCCTGTCAGCATGTGGCCTCCGTGAGGAATGCAGCAATATTGGTCCCGTCTCCGGCATGCCAAAGGTCGGTTGAATTGTGA 1359 0.4555 MNATVNRKIVHKLFKVRLGLLPNITSPFRKMGCVHGKCCSRYPPPSEGGSVNRQEFGPSSFQPKHILTQKSLESIPVPSHNFTLEYSVLTQRGYYPDTPTKENQDSYCIRTQIQGNPSIHFFGVYDGHGQYGSQCSNFVKDKLVETLSNDHSLLDDPVKAYASAFVSTNQELQNSEIDDSMSGTTAITVLVIGDVLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDECERVKLCGARVLSVDQVEGLMDPNIQTWGDEESQGGDPPRLWLPNAMYPGTAFTRSVGDSLAETIGVIAIPEVSMVRLTPNHPFFIVASDGVFEFLSSQTVVDMAASYTDPRDACAAIAGESYKLWLDHESRTDDITIIIVHIKSLSNSVTRVASSEINVSALARAKSKRGTSEISPTTSDVHRSVGNDLSHLQSCQHVASVRNAAILVPSPACQRSVEL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0224 452 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Lele22g0224 452 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 80 377 - -
Lele22g0224 452 PANTHER PROTEIN PHOSPHATASE 100 374 - -
Lele22g0224 452 SUPERFAMILY PP2C-like 75 377 IPR036457 -
Lele22g0224 452 Pfam Protein phosphatase 2C 114 350 IPR001932 -
Lele22g0224 452 CDD PP2Cc 101 375 IPR001932 -
Lele22g0224 452 Gene3D - 74 377 IPR036457 -
Lele22g0224 452 ProSiteProfiles PPM-type phosphatase domain profile. 85 375 IPR001932 -
Lele22g0224 452 SMART PP2C_4 81 373 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0224 Lele-ChrLele22 1354609 1356838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0224 31 380 PP2C-type Phosphatase Gene Family AT3G06270 72.286 0.0 524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0224 22 1354609 1356838 Lele15g1517 15 8984420 8988913 CCT
Lele22g0224 22 1354609 1356838 Lele22g0224 22 1354609 1356838 ECH
Lele22g0224 22 1354609 1356838 Lele23g1838 23 21736430 21739389 hybridization
Lele22g0224 22 1354609 1356838 Lele24g0212 24 1367853 1370002 hybridization