Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0204 ATGCACTCTTGGGGCCCCGAATTTTTGCTGCTTTTTTATGCTTGCACAAGTTGCTTACGATTCTGCTCGTGGGTGCGTAGGGTTTCTCTATCTTTCTCAGTTCACTCAGCAAATTTTGCGCTAATGGCGAGATACCGAAGCCGGAGCAGAAGCTACGGCCCTCGCCGGCGAAGCAGAACCCCGCCTCGAGGACGCAAGCGGTACGACGATGAACCTCGTGATCGCCACCGTGAAAGCAGGTCCTACAGAGACCGCCGCTCTCCTGCTCCTTCAGGCTTGCTTGTTCGTAATCTTCCGCTCGATGCCAGGCCTGAAGATCTTAGGGGCCCCTTTGAGCGCTATGGCCCAGTGAAAGATGTATATCTTCCTAAAAATTACTACACTGGTGATCCCCGGGGCTTTGGCTTTGTTAAATTCCGGTATGCTGAAGATGCTGCAGAAGCAAAGCAACAACTTAATCATACTGTTATTGGTGGACGTGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCATTCGAATACTCGCATAAGTGGTCGATATGGAGGAAGTAGTAGAAGGAGAACTCCCCCAAGATCCCCAAGGCGCCGATATCGTTCCTACTCGAGGTCTCTATCACCGGCTGGGGATCACACAAGTTTATAA 663 0.4977 MHSWGPEFLLLFYACTSCLRFCSWVRRVSLSFSVHSANFALMARYRSRSRSYGPRRRSRTPPRGRKRYDDEPRDRHRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGDPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMHSNTRISGRYGGSSRRRTPPRSPRRRYRSYSRSLSPAGDHTSL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0204 220 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 43 183 - -
Lele22g0204 220 MobiDBLite consensus disorder prediction 169 220 - -
Lele22g0204 220 MobiDBLite consensus disorder prediction 63 85 - -
Lele22g0204 220 Gene3D - 42 182 IPR012677 -
Lele22g0204 220 SMART rrm1_1 92 165 IPR000504 GO:0003723
Lele22g0204 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Lele22g0204 220 MobiDBLite consensus disorder prediction 50 95 - -
Lele22g0204 220 SUPERFAMILY RNA-binding domain, RBD 88 195 IPR035979 GO:0003676
Lele22g0204 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 163 IPR000504 GO:0003723
Lele22g0204 220 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 92 212 - -
Lele22g0204 220 SMART rrm2_1 92 165 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0204 Lele-ChrLele22 1253802 1258460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0204 63 196 Eukaryotic Initiation Factors Gene Family AT2G36660 24.818 8.43e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0204 22 1253802 1258460 Lele23g1852 23 21833540 21837705 hybridization