Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0185 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGAGGACGAATGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGGTTAAAGCAAAAGAGCAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATAACTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTACGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAGCCTCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACAATGCAAAGATCTTCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCTGGAATAGTAAATCCAGGACTGAATCCAGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGAATAGATCAAATTCGGCCAGGTTTAGGAGCACAAGTTCAAAAACCTATCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTCGGGGTAGCTTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAGTTGGTTCTCCCATGCAATCCACTTCATCTAAGATGAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATCGGCCCTTCCAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGTGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGCGTATCCAAAGGCTTGATGATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCGTCAACTAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAACACTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCGTCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCGAAACTACTATTGTCAGACATATGCAGGCCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTAAGGTTTCAGCCAAGAATAGGACACCTTCTGGCTGCAGCGGCTGGTAATGTTGTATCCCTCTACGACATTGAGACTGACAGGCTGGTTCAGTCATTACAGGGGCACACTACAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCGTCTGGGGACTGCATTCACGAGCTTAGCTCCAGTGGGAACATGTTCCATTCTTGCGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCCGCTCACGAGTGCGTGATATCGGCTTTAGCACAATCACCAGTGTCAGGAATGGTTTCTTCTGCAAGTCATGACAAATCGGTCAAGATCTGGAAATGA 2367 0.4529 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQVKAKEQQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAITSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALQHMQARNQQPPQDIKSEVNMGTMQRSSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPILQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSVGSPMQSTSSKMNMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTSEEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADRNYYCQTYAGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHLLAAAAGNVVSLYDIETDRLVQSLQGHTTDVHSVCWDTNGDYLASVSQESVRVWSLASGDCIHELSSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVSGMVSSASHDKSVKIWK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 548 IPR001680 GO:0005515
Lele22g0185 788 Gene3D - 643 788 IPR015943 GO:0005515
Lele22g0185 788 ProSitePatterns Trp-Asp (WD) repeats signature. 526 540 IPR019775 -
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 592 627 - -
Lele22g0185 788 Gene3D - 476 642 IPR015943 GO:0005515
Lele22g0185 788 Coils Coil 87 107 - -
Lele22g0185 788 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 788 IPR001680 GO:0005515
Lele22g0185 788 PRINTS G protein beta WD-40 repeat signature 775 788 IPR020472 -
Lele22g0185 788 PRINTS G protein beta WD-40 repeat signature 526 540 IPR020472 -
Lele22g0185 788 PRINTS G protein beta WD-40 repeat signature 568 582 IPR020472 -
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 549 581 - -
Lele22g0185 788 Pfam WD domain, G-beta repeat 590 625 IPR001680 GO:0005515
Lele22g0185 788 Pfam WD domain, G-beta repeat 551 581 IPR001680 GO:0005515
Lele22g0185 788 Pfam WD domain, G-beta repeat 670 705 IPR001680 GO:0005515
Lele22g0185 788 Pfam WD domain, G-beta repeat 512 539 IPR001680 GO:0005515
Lele22g0185 788 Pfam WD domain, G-beta repeat 754 788 IPR001680 GO:0005515
Lele22g0185 788 MobiDBLite consensus disorder prediction 335 410 - -
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 542 - -
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 674 714 IPR001680 GO:0005515
Lele22g0185 788 SUPERFAMILY WD40 repeat-like 501 788 IPR036322 GO:0005515
Lele22g0185 788 MobiDBLite consensus disorder prediction 323 415 - -
Lele22g0185 788 CDD WD40 503 788 - -
Lele22g0185 788 Pfam LisH 10 36 IPR006594 GO:0005515
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
Lele22g0185 788 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 788 IPR044716 GO:0003714
Lele22g0185 788 SMART Lish 8 40 IPR006594 GO:0005515
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 581 IPR001680 GO:0005515
Lele22g0185 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 756 788 - -
Lele22g0185 788 SMART WD40_4 500 539 IPR001680 GO:0005515
Lele22g0185 788 SMART WD40_4 585 625 IPR001680 GO:0005515
Lele22g0185 788 SMART WD40_4 708 747 IPR001680 GO:0005515
Lele22g0185 788 SMART WD40_4 749 788 IPR001680 GO:0005515
Lele22g0185 788 SMART WD40_4 667 705 IPR001680 GO:0005515
Lele22g0185 788 SMART WD40_4 628 664 IPR001680 GO:0005515
Lele22g0185 788 SMART WD40_4 542 581 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0185 Lele-ChrLele22 1135679 1141826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0185 525 748 U-box Gene Family AT2G33340 28.870 1.34e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele22g0185 WD40 0.01 CL0186