Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0164 ATGGCTTCAAGTTTGGCGGAGCTTCTGGCAAAGGAAGGATTCAAAAAGAGCAGAAGAATTACAAGGTCGATATCTTCCCTGAAGTCTGATGCTTTAACTGCAAAGCCTCCACGTCACTCTTTCCACAACCAACAAAGGAGATCTGGTGACAGAATTTTAACCGAGAGAGCAAAGTTTGATGTATTATTGAATAGTGACACAGCTAAGAACGTGAGGCCAAGGGATAATCTTGATAAAAGAGAAAAAATGGATGAAGAACTGAAGAATAAAAACGAAGAGCAACTTTGTATCAGCACAGAGATTCAGAGAAAAGATAAGGCGTCAGCAAAGCATCTTTTGCAAGTGTTTTGCGATTCGCCTTTCGAGACACGGACAACATGGCTGCCTGAACTATGGGAGGATCTATTTTCTCCACATTTTTTCCAACTGAAAGAATGGTATGCTAAGGAAGTTGACATTCTAGCCAGTAGACCAAGCAGAGCAAAAAAACGAAATCTTCTTGAAAAAGTCTATGAGGAACATTTGGATTCTGGAACTTACATGTTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAATTAAACCTCCATCTGTTCCTTCTATCAATATTCCATCAATCTCTTCCTCGGGAAGTCGGCAGGGAAGTTTGCTTGGTCATTCGTCAGAGTTGTCTAGTCCCATTGATTCATTCTCATCACCTCAACCAACAGTCAGCAAAAGACTCTATCATTCTGTCTTTGATAGCTTGAATAATGAGGAGGAGGATGACACAGATACTTGCATAAGAGGCTGTTACGGTTCAGCTTCTTTTGAGAAAACATCTACACAGGTATCTGAAATAGTGAAATTCACTTATCAAGATATCAAAGAAGACTCCACTAAGCCAACTAAGACGAGCTCTTCTCTTGAAGGATTATCTTTTCCAACCATTCCACAAGAATTTATTTGTCCTCTAACTGGAAAATTATTGGAGGAACCAGTCACTATAGAGACTGGGCAAACCTTTGACCATGCAGCTCTCAAGTCATGGTTCCAAAAGAGACACAGAACATGTCCTGTAACAGGAGTTACTTTAGATTTTGTAGCTATGCCACTAACTAACATTGTCTTGAAGCGACTGATTCACATTTGGAAGTCAGAACAATTAAGTGAGCTCTTGGATTCCGCTTCTCAAATCTCAAAAAATTCAAGAGAGTCAAAGCTAACAGATAGGGATGAGATTATTACTTCCAAGTTAGAGAGTCTTTTCACTGTGTTAAATGAAGAGGACAAAGTAACTTATGCCAAGCATCTCATATCCTTAGGGGTTTTAGAATTTCTGCTCAGGAGGTTCGAATTGGGAAATTTGGAAGAGAAAACACATGTGGCGGCACTCTTGCTAAATTTTATTGGAGCAGACTCTTGTTGCATATATCAGATAGCGAGAGATATTAATAAAAGATTTCTTCTTGATCTTCTTCACCACAAGGAGGTTACTCCAAGAACTAACGCTATATTATTGCTTACCAAACTCCTAGCATTAAAAAGAAGAAAGAATGTTACTTCATTCTTAAATCGCTTGAAGGGTGACGATATGTCTACTACAATGCATGTTCTGCTCATGCACCTAAAGAATTCTTCACCACATCACAAACCTCTAATTGGAGTCCTTTTGTTGCACTTTGACCTACTGATTTCACTTCGGGTCGAGTCTCAAATTTATAGCTCATACAGAGAGCAGGCTGTGAATTCGATTTCAGAGGCTCTCAATGCCAGCTTAAATGAAGAGAAAGTCCGAGAAAATTGTTGTACAGCACTTCTTATCTTGGCTGGGCATTTTTCTTCCACTGGGAAAGTATTGACCAAGAGTAGCATTCTAAAAGAAGTTGGATATATAGTCAATAGTTCAGAAGTTGACACTTCTGATCATGATGAAGAGGATTTATTATGGGATGGAGCCTTTTCATTTGAAAAGGAAGAAAAACGGAGCAAAGAGTGGCTGGTGAAATTGTTAGAATCAATGATTGGTGATGGAGAGAGTCCATTTTTGAAGTCTATCTCTATATGTTTAGACTCTGGACACCCAGATTTGGTCAGCATGTGTTTGATAACTGTTGCTCGGTTGAGCTCCTCGCTTTCTATACAATATAATGCTGGATTACACCTTGCTGCCTTCTTAGCCGTCATTTATGAGATAAAACAAGTCCTGGAGAATGGGGAACTAGAACTCAAGATTCTCGCTTCCATGTGCCTACTTAATTTCAGCAAAATATCAGAATGCAGAACACTTTTGACGACTTTGTCAGAAGATTTTGATGGTCCTCTTCACGAACTACTTGATGTAACGTGGACTGCAACGCAGCTGCGTGCGATTTTTGCTGGCGTGGATTTGTAA 2376 0.3956 MASSLAELLAKEGFKKSRRITRSISSLKSDALTAKPPRHSFHNQQRRSGDRILTERAKFDVLLNSDTAKNVRPRDNLDKREKMDEELKNKNEEQLCISTEIQRKDKASAKHLLQVFCDSPFETRTTWLPELWEDLFSPHFFQLKEWYAKEVDILASRPSRAKKRNLLEKVYEEHLDSGTYMFAVYYKDWLTEGIKPPSVPSINIPSISSSGSRQGSLLGHSSELSSPIDSFSSPQPTVSKRLYHSVFDSLNNEEEDDTDTCIRGCYGSASFEKTSTQVSEIVKFTYQDIKEDSTKPTKTSSSLEGLSFPTIPQEFICPLTGKLLEEPVTIETGQTFDHAALKSWFQKRHRTCPVTGVTLDFVAMPLTNIVLKRLIHIWKSEQLSELLDSASQISKNSRESKLTDRDEIITSKLESLFTVLNEEDKVTYAKHLISLGVLEFLLRRFELGNLEEKTHVAALLLNFIGADSCCIYQIARDINKRFLLDLLHHKEVTPRTNAILLLTKLLALKRRKNVTSFLNRLKGDDMSTTMHVLLMHLKNSSPHHKPLIGVLLLHFDLLISLRVESQIYSSYREQAVNSISEALNASLNEEKVRENCCTALLILAGHFSSTGKVLTKSSILKEVGYIVNSSEVDTSDHDEEDLLWDGAFSFEKEEKRSKEWLVKLLESMIGDGESPFLKSISICLDSGHPDLVSMCLITVARLSSSLSIQYNAGLHLAAFLAVIYEIKQVLENGELELKILASMCLLNFSKISECRTLLTTLSEDFDGPLHELLDVTWTATQLRAIFAGVDL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0164 791 PANTHER OS04G0584500 PROTEIN 289 786 - -
Lele22g0164 791 CDD RING-Ubox_PUB 315 356 IPR045210 -
Lele22g0164 791 SMART Ubox_2 314 378 IPR003613 GO:0004842|GO:0016567
Lele22g0164 791 SUPERFAMILY RING/U-box 305 381 - -
Lele22g0164 791 MobiDBLite consensus disorder prediction 213 232 - -
Lele22g0164 791 Gene3D - 424 787 IPR011989 -
Lele22g0164 791 SUPERFAMILY ARM repeat 82 752 IPR016024 -
Lele22g0164 791 MobiDBLite consensus disorder prediction 27 48 - -
Lele22g0164 791 Pfam U-box domain 311 382 IPR003613 GO:0004842|GO:0016567
Lele22g0164 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 395 IPR013083 -
Lele22g0164 791 ProSiteProfiles U-box domain profile. 310 385 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0164 Lele-ChrLele22 1008802 1012812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0164 234 378 U-box Gene Family AT3G54850 28.302 1.74e-13 72.4