Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0158 ATGGGTTCTTCGTACGGTCGCATCCTCGGGACTCATGAGGGAATTCATAGCTTTGACAGTTATGCTGTACGCCTGTACCGTTCCCTCTCTTTTTCTTTCTCTCGGTCTTTATTTTATCTCCCATCTTCTCCCTGGGAGTTATTTCGTCAGCCCTGGTGGTTGTGGATCTCATCAACATCGTGGTTTGTTTCTGTTCTCCAAGATAATCTATTGTACAGTGATTTTGATGGGCTTTTTAGCCCTGCTGTTTCCCGCATTTCAATTTCTTTCCTTTCTCCTATTACCCAACATTTGGTTTTTCTGGATTTCCATTGGCAAGTTTACCAAAGAAAAACGTTCCAAATGGCATCAACATCTGGTGCCCCCAAGATGCCATTCCCTGTGACAGAGGGAGCTTCGCAGTATCGACTGTATCCTGCTCCTCTTGCAAAATTTGATGATATCGTGGCCGATCGCAGGCTCTTTATGCATACCTTGGAGAAGCTCCACAGTACTATGCGTACCAAGTTCATGATTCCCATTATCGGGGGAAGAGAACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGTTTTCCACTTTCCATCTACAGCCACAAATGCTTCTTTTGTGTTGCGGAAGTACTATTCTCAATTGCTTTACCACTATGAACAAATATACTATTTTAAGGCCCCAGGATGGCATGACACTTCTGATGCTACGCAGAGTCCATCAACTGTGCCGGTTCCTGCTCCAAGAATGCAGCAATTTTTGCCTCCCCCAGTTAATGCCCCTGAATTGCCTGAAGGGACTTCAGCTTCTTCTGTAGGAACTCCAGTGATTGGGGTGATTGATGGAAAATTCGAAAGTGGGTATCTTGTTACTGTCACTGTGGGTTTAGAGAAACTTAAAGGTGTCCTATATCAGGCTCCACAAAACCCTGTTTTGCCAACAATGCTGCAACATAATAGTGTTCCAGTCAGTAACAGTAATACTTCATCAGCTGCTTTGGGCGTCCATCGTCACCGACGCAAGAAGTCTGAGATTAAAAAGAGAGATCCTGATCATCCCAAACCCAATCGAAGCGGGTACAATTTCTTCTTTGCAGAGCAGCATGCAAGATTGAAACCACTTCACCATGGGAAGGACCGTGAAATCAGTAAGATTATTGGTGAACTCTGGAACAAATTAATAGAGCCGGAGAAATCAGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGAATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGCGATGGCATGCTGCTACAACAACAAATTCCTGATAAGGATATGATGGATGCCGACGGAAAAGTGGATGAAACTGAGGGAGTAGAATTTTCTCAAACACAAGATGAGAGTTCTGGTGAAAGTGACTACGAAGATGATAAAGGTACAGAGCATAATATGGACATTGACGCGTCTCATGGAATGATAGGAGTGGGTGCTGAATCTAGCTATCTGGGTGCAGAGAAACAATCAAAGGAGAAAGAAGGGAATGATGATGGAGATCAACAACATGCTCAAAAGATGGATGAGAGCTCAAGCATGATGGCTATTTAG 1647 0.4353 MGSSYGRILGTHEGIHSFDSYAVRLYRSLSFSFSRSLFYLPSSPWELFRQPWWLWISSTSWFVSVLQDNLLYSDFDGLFSPAVSRISISFLSPITQHLVFLDFHWQVYQRKTFQMASTSGAPKMPFPVTEGASQYRLYPAPLAKFDDIVADRRLFMHTLEKLHSTMRTKFMIPIIGGRELDLHRLFLEVTSRGGIEKIIRERRWKEITAVFHFPSTATNASFVLRKYYSQLLYHYEQIYYFKAPGWHDTSDATQSPSTVPVPAPRMQQFLPPPVNAPELPEGTSASSVGTPVIGVIDGKFESGYLVTVTVGLEKLKGVLYQAPQNPVLPTMLQHNSVPVSNSNTSSAALGVHRHRRKKSEIKKRDPDHPKPNRSGYNFFFAEQHARLKPLHHGKDREISKIIGELWNKLIEPEKSVYQEKALKDKERYQAEMENYREKLKTGQGIGDGMLLQQQIPDKDMMDADGKVDETEGVEFSQTQDESSGESDYEDDKGTEHNMDIDASHGMIGVGAESSYLGAEKQSKEKEGNDDGDQQHAQKMDESSSMMAI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0158 548 SMART ARID_2 146 236 - -
Lele22g0158 548 MobiDBLite consensus disorder prediction 339 373 - -
Lele22g0158 548 MobiDBLite consensus disorder prediction 470 548 - -
Lele22g0158 548 MobiDBLite consensus disorder prediction 518 537 - -
Lele22g0158 548 Pfam ARID/BRIGHT DNA binding domain 152 236 IPR001606 GO:0003677
Lele22g0158 548 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 369 436 IPR009071 -
Lele22g0158 548 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 128 481 - -
Lele22g0158 548 CDD ARID_HMGB9-like 151 236 IPR045303 GO:0003677
Lele22g0158 548 SUPERFAMILY ARID-like 148 250 IPR036431 GO:0003677
Lele22g0158 548 Pfam HMG (high mobility group) box 369 436 IPR009071 -
Lele22g0158 548 ProSiteProfiles ARID domain profile. 149 240 IPR001606 GO:0003677
Lele22g0158 548 SUPERFAMILY HMG-box 356 440 IPR036910 -
Lele22g0158 548 FunFam High mobility group B protein 15 351 446 - -
Lele22g0158 548 FunFam High mobility group B protein 15 143 257 - -
Lele22g0158 548 Gene3D - 142 253 IPR036431 GO:0003677
Lele22g0158 548 Gene3D High mobility group box domain 353 445 IPR036910 -
Lele22g0158 548 CDD HMGB-UBF_HMG-box 369 433 - -
Lele22g0158 548 Coils Coil 418 445 - -
Lele22g0158 548 SMART bright_3 150 241 IPR001606 GO:0003677
Lele22g0158 548 SMART hmgende2 368 437 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0158 Lele-ChrLele22 952272 955399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0158 140 464 ARID Transcription Factor Family AT1G04880 60.000 4.91e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele22g0158 ARID 1.6e-17 CL0123