Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0082 ATGGTGCCTGTAGCTGGCTCAACAGTGCTTTGTTTTTTTATCTGTCTGCTAAATGCTATGTTGGTTCTGTTCGTTGTTTCAGGCCACAAACTTGTTATAATGGCATTGTGCAATAAACTCGGGAATCTATTAAGGCAGGGTGCTGCGCAAAACAGACAAGTACCTGTTGCATCAATGCTGAATTATGTTCGCTGCATGTCATCCTCCAAGCTTTTCATTGGCGGCCTTTCTTATGGAGTTGATGATCAATCTCTCAGGGATGCATTTGCCGGCTTCGGAGATGTGGTTGAGGCAAGGGTTATAACTGATAGAGATACTGGAAGGTCAAGAGGTTTTGGATTTGTCAATTTCTCCAGTGATGAATCTGCAAGTTCTGCTATTTCTGCAATGGATGGGCAGGATTTAGGTGGCAGAAACATTCGTGTGAGCTATGCAACTGACAGACCACCTAGACCTCGATCCTTTGGTGGTGGTGGTGGGGGTTATGGTGGAAATGGTGGTGGTTATCGTAGGGATGATGGAGGTTTTGACAGTTCATCCTTTTAA 546 0.4469 MVPVAGSTVLCFFICLLNAMLVLFVVSGHKLVIMALCNKLGNLLRQGAAQNRQVPVASMLNYVRCMSSSKLFIGGLSYGVDDQSLRDAFAGFGDVVEARVITDRDTGRSRGFGFVNFSSDESASSAISAMDGQDLGGRNIRVSYATDRPPRPRSFGGGGGGYGGNGGGYRRDDGGFDSSSF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0082 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 141 IPR000504 GO:0003723
Lele22g0082 181 Gene3D - 58 179 IPR012677 -
Lele22g0082 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Lele22g0082 181 MobiDBLite consensus disorder prediction 143 181 - -
Lele22g0082 181 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 43 172 - -
Lele22g0082 181 SMART rrm1_1 70 143 IPR000504 GO:0003723
Lele22g0082 181 FunFam Glycine-rich RNA-binding protein 2 58 180 - -
Lele22g0082 181 SUPERFAMILY RNA-binding domain, RBD 64 175 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0082 Lele-ChrLele22 489710 491026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0082 68 158 Eukaryotic Initiation Factors Gene Family AT4G34110 40.659 2.40e-12 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0082 22 489710 491026 Lele23g1972 23 22619400 22621252 hybridization
Lele22g0082 22 489710 491026 Lele24g0077 24 508343 509574 hybridization