Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0055 ATGCGAAATCTCGGAGTTAGAGAATTGCCGTGGCTGTTGAGCTACGCATCAATGGCGGGCGTATCCCTCCAGTGCGGTGACTGTGGAGCGCTGTTGAGGTCCGTACAAGAAGCTCAGGAGCACGCAGAGGTCACCTCCCACTCCAACTTCTCCGAATCGACTGAAGCTGTTCTCAACCTTGTTTGCTCCACTTGTGGCAAGCCATGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACGGGGCATAGTGATTTTGTTGATAAGACATCTGAGGCAGCGAAACCAATAAGTTTGGAGGCTCCAAAGGTGGATGCAATGTCTGATGAAGTTGGCACGGCAACCACTGACCAACCTGATGAAATGGTTGTTCCTGAGGTTGACAAAAAGGTGCTTGAGGAACTTGAATCAATGGGTTTTTCAACTGCACGTGCAACACGCGCACTTCATTATTCTGGTAATGCTAGCCTTGAGGCTGCGGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGATACCTGCAAACACCAAGGTTGAGGCTCCTAAACCTTCTCTCACACCAGAACAACTGAAAGCTAAACAACAGGAACTCAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAAAGAGAAAGAGAAAAGGAGAGAATTCGTATAGGCAAGGAGTTACTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGTTGTTGGCTCTGCGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAGGCAAAAATTGGAAGAAGACAAGGCTGAAAGAAGGCGTAGACTTGGATTGCCTCCTGAAGAACCATCAGCTCCGAAACCGTCAAATGTCGTGGAGGAAAAGAAGAGTTCATTGCCTGTTCGTCCTACCACGAAAGCTGAGCAAATGAGAGAGTGCTTGCGCTCTCTCAAGCAGAACCACAAGGATGATGATGCAAGAGTAAAGAAAGCATTCCAGACTCTCCTAACCTATGTGGGGAATGTTGCCAAAAGTCCCGACGAGGAAAAATTTAGGAAAATAAGACTTAGCAACCCAACTTTTCAGGAAAGAGTTGGTGCCTTGGGAGGGGGAATTGAATTCCTGGAAATTTGTGGGTTTGAGAAAATCGAAGGGGGAGAGTTTCTGTTTTTGCCTAGGGACAAGGTTGACAAGGCAGTCCTCAATTCTGCTGGCTCTGAACTCGACTCTGCAATCAAAAATCCCTTTTTTGGAGTTCTTTAG 1284 0.4665 MRNLGVRELPWLLSYASMAGVSLQCGDCGALLRSVQEAQEHAEVTSHSNFSESTEAVLNLVCSTCGKPCRSKTESDLHTKRTGHSDFVDKTSEAAKPISLEAPKVDAMSDEVGTATTDQPDEMVVPEVDKKVLEELESMGFSTARATRALHYSGNASLEAAVNWVVEHENDPDIDQMPLIPANTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRRLGLPPEEPSAPKPSNVVEEKKSSLPVRPTTKAEQMRECLRSLKQNHKDDDARVKKAFQTLLTYVGNVAKSPDEEKFRKIRLSNPTFQERVGALGGGIEFLEICGFEKIEGGEFLFLPRDKVDKAVLNSAGSELDSAIKNPFFGVL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0055 427 Pfam UBA/TS-N domain 130 164 IPR015940 -
Lele22g0055 427 SUPERFAMILY PUG domain-like 309 423 IPR036339 -
Lele22g0055 427 ProSitePatterns Zinc finger C2H2 type domain signature. 25 47 IPR013087 -
Lele22g0055 427 SUPERFAMILY UBA-like 116 181 IPR009060 GO:0005515
Lele22g0055 427 Gene3D - 129 175 - -
Lele22g0055 427 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 127 168 IPR015940 -
Lele22g0055 427 MobiDBLite consensus disorder prediction 200 226 - -
Lele22g0055 427 Coils Coil 198 230 - -
Lele22g0055 427 MobiDBLite consensus disorder prediction 186 226 - -
Lele22g0055 427 ProSitePatterns Zinc finger C2H2 type domain signature. 62 84 IPR013087 -
Lele22g0055 427 CDD PUB_UBA_plant 321 427 - -
Lele22g0055 427 MobiDBLite consensus disorder prediction 271 287 - -
Lele22g0055 427 SMART PGNneu 337 400 - -
Lele22g0055 427 MobiDBLite consensus disorder prediction 271 317 - -
Lele22g0055 427 CDD UBA_PUB_plant 127 175 - -
Lele22g0055 427 Pfam PUB domain 334 405 IPR018997 -
Lele22g0055 427 SMART uba_6 129 167 IPR015940 -
Lele22g0055 427 Coils Coil 233 278 - -
Lele22g0055 427 Gene3D - 319 417 - -
Lele22g0055 427 PANTHER F13M7.16 PROTEIN 18 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0055 Lele-ChrLele22 333040 338519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0055 110 427 C2H2 Transcription Factor Family AT1G04850 78.193 3.12e-151 430