Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0046 ATGCGAACTTCATGGGCAGATTTGGCTGCGAGCTCTGCAGCTGAAAGTGCAGGTCCTGGCTCTTCTGCCGGCAATGTGGGAACTGGTAACACTTCAGCTCCTTCACGGCCAGTCTATGTTCCTCCACATCTTCGGAACCGTCCACCATCCACAGAAGGCCCTGCTCCAGCATATAGTGGCCGTACTTCTGGTTCTGGTACTGTTAGTGGTAATGTTGGATCACGTTTGGCTGCACCCAGAAATGATAATCGGTTTGGGTACGGTGGCAGTAGTCGTGCTGGATGGGGAAACAGGGGCAGTGGTTGGGATCGTGGCAGGGAGAGGGAGGCCAATCCCTTTGGCGATGTGGATAACGCAGAAGAGGCATTTGGCGAGTTGGAGAATACAGGAATCAATTTTGATGCATATGAAGACATTCCTGTGGAGACTAGCGGTGCGAATGTGCCACCCCCAGTGAATACGTTTGCAGAGATTGACTTGGGTGAGGAACTTAATCAGAATATACGAAGGTGCAAATATGTGAAGCCAACACCAGTTCAACGATACGCCATACCAATATCCCTCGCTGGACGAGATTTGATGGCTTGTGCCCAGACGGGTTCTGGAAAGACAGCTGCATTCTGTTTTCCTATCATCAGTGGAATTATGAGGGGGCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCTCTTGTTCTCTCACCTACGAGGGAGCTATCAATGCAAATACATGAAGAAGCCAGGAAGTTTTCTTACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGTGCACCAATAAACCAGCAGCTGCGAGATCTTGAGAGAGGAGTTGACATTCTTGTGGCAACTCCTGGAAGATTGGTGGATTTGCTAGAGAGGGCTAGAGTTTCCCTGCAGATGATAAGATATTTGGCCTTAGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTGGAGCAGATGGACATGCCTCCACCTGGTGCCAGACAGACCATGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCTTCGGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGTTCAAGTACAGATTTGATTGTCCAAAGAGTTGAATTTGTTCAGGAGTCTGATAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCATTGGAACACTGGCTGTGTATGAATGGTTTTCCAGCTACCACTATTCACGGGGATAGGACACAACAGGAGAGGGAAATGGCATTAAGGTCATTTAAAAGCGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCGCGTGGTCTTGATATTCCTCATGTGGCCCATGTGGTCAACTTTGATCTACCAAATGATATTGATGATTATGTACACCGGATTGGAAGGACGGGAAGAGCAGGAAAGAAGGGTCTTGCCACTGCATTCTTCAATGAAGGCAACTCATCCCTCGCGAGGGCTTTAGCAGATTTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTTACGGTATGCTGCTAGATCATCTTTTGGTGGAAGGAACCGTCGATCAGGAGGAGGTCGTTTTGGCGGTCGTGACTTCCGAAGAGAGAGCTTTAACAGCAGAGGTGGTGGTTCTGATTATTACAGTGCAGGAAATAGCAGTGGCGGGTATGGGGCTTCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGCGTCACAAGTGCGTGGGATTGA 1842 0.4864 MRTSWADLAASSAAESAGPGSSAGNVGTGNTSAPSRPVYVPPHLRNRPPSTEGPAPAYSGRTSGSGTVSGNVGSRLAAPRNDNRFGYGGSSRAGWGNRGSGWDRGREREANPFGDVDNAEEAFGELENTGINFDAYEDIPVETSGANVPPPVNTFAEIDLGEELNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNEGNSSLARALADLMQEANQEVPAWLLRYAARSSFGGRNRRSGGGRFGGRDFRRESFNSRGGGSDYYSAGNSSGGYGASSGGYAGGYGPGVTSAWD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0046 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 547 IPR001650 -
Lele22g0046 613 MobiDBLite consensus disorder prediction 1 35 - -
Lele22g0046 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Lele22g0046 613 MobiDBLite consensus disorder prediction 1 114 - -
Lele22g0046 613 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
Lele22g0046 613 Gene3D - 372 551 IPR027417 -
Lele22g0046 613 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Lele22g0046 613 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Lele22g0046 613 SMART helicmild6 427 508 IPR001650 -
Lele22g0046 613 FunFam Probable ATP-dependent RNA helicase DDX4 116 371 - -
Lele22g0046 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 547 - -
Lele22g0046 613 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Lele22g0046 613 MobiDBLite consensus disorder prediction 56 76 - -
Lele22g0046 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
Lele22g0046 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 525 IPR027417 -
Lele22g0046 613 SMART ultradead3 172 384 IPR014001 -
Lele22g0046 613 CDD SF2_C_DEAD 381 517 - -
Lele22g0046 613 Gene3D - 112 371 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0046 Lele-ChrLele22 294177 297800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0046 151 540 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 1.26e-62 211