Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0033 ATGAGAAGAGGGGCGCAACAGCGTACAGCACGTGATACCTTGTTGGCTTTATTCTTGTGCCCGCCAGCCTCTCCGCTTCGAAGTATCATTGCGCTCCTCCGCCGACTCCTCCAAATCCGATCTCGTCCTCCGTTGATTTTTGATCAGGGCATAATGAGGGGAAGGAGCTATAGTCCGTCGCCGCCCAGGGGTTATGGCAGAAGAGGAAGAAGTCCTAGCCCCAGAGGTCGTTATGGTGGCCGTGGCAGAGATCTCCCTACCAGTCTTCTCGTTCGCAACCTTCGCCATGACTGCAGGGCTGAGGATCTTCGTAGACTTTTTGGACAATTTGGCGCTCTCAAGGACATTTACCTCCCGAAAGATTATTATACTGGAGAACCCCGAGGCTTTGGTTTTGTCCAATATGTAGATCCTGCTGATGCTGCAGATGCAAAATATCATGTGGATGGTCAAATTCTTCTTGGTCGAGAGTTGACCGTTGTTTTTGCTGAGGAGAACAGAAAGAAGCCTACTGAGATGAGATCAAGAGAAAGAAGGGGCCGATTTTCTGATCGAAGAAGGTCTCCACCTCGTTATTCTCAATCTCCTCGATACTCTAGGTCTCTGCCACGTCATAGATCTCGGTCTCAAAGCCGTGGTTATGATTCTCCCCCTCCTAAACGAAGGGAGTATTCAAGATCCGTGTCGCCTGAAGATAGAAGAGACAGTCGAGAAAGAGAGAGAGAAAGATCATACTCGCGGCAGAGTAGGGAGAGGTCATACTCACGCTCTCCACCGCCCTATAATGGTGGTTCAAGGAGTCGAAGTCAGAGTCCAGCTAAGGGCCCAAGCCGGAGCCGCAGTCAGAGTCCGAATCTTGATGATTATCCAAGGGAACCTCGTGGTAGGTCCCCCAGTCAATGA 903 0.5072 MRRGAQQRTARDTLLALFLCPPASPLRSIIALLRRLLQIRSRPPLIFDQGIMRGRSYSPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRHDCRAEDLRRLFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHVDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFSDRRRSPPRYSQSPRYSRSLPRHRSRSQSRGYDSPPPKRREYSRSVSPEDRRDSRERERERSYSRQSRERSYSRSPPPYNGGSRSRSQSPAKGPSRSRSQSPNLDDYPREPRGRSPSQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0033 300 SMART rrm1_1 88 161 IPR000504 GO:0003723
Lele22g0033 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 158 IPR000504 GO:0003723
Lele22g0033 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
Lele22g0033 300 SUPERFAMILY RNA-binding domain, RBD 87 192 IPR035979 GO:0003676
Lele22g0033 300 MobiDBLite consensus disorder prediction 167 191 - -
Lele22g0033 300 Gene3D - 54 179 IPR012677 -
Lele22g0033 300 MobiDBLite consensus disorder prediction 167 300 - -
Lele22g0033 300 MobiDBLite consensus disorder prediction 208 250 - -
Lele22g0033 300 MobiDBLite consensus disorder prediction 251 284 - -
Lele22g0033 300 MobiDBLite consensus disorder prediction 50 83 - -
Lele22g0033 300 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 86 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0033 Lele-ChrLele22 230513 236588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0033 87 202 Eukaryotic Initiation Factors Gene Family AT4G34110 27.586 7.30e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0033 22 230513 236588 Lele23g2022 23 22904364 22909031 hybridization
Lele22g0033 22 230513 236588 Lele24g0031 24 252959 256581 hybridization