Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g2005 ATGGCTATGCAGATTCAAGCGAGAGCAATCCCGCCGATCTTGATTGGGAAAGATGTTCTTGGTGCTGCGAGTACGGTTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGCTCTACCATGTGCTCAATTCACTCCACGAAATGGAACTAGTGTCGTTGTCATATGCCCTACTAGGGAGCTTGCAATACAGGAAAGAACTTCTCAAGTATCACTCCCAGACTCTTTTATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCCGGTATTCTTCTTGATCATCTTCAAAATAGAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATAATTAAAATCTTAGCAAGAATCCTATGTCAGAGCTTTTCTAATGATGGGAGAACCAAGATCGATTGCTTTAATATACATGGAAAACAAAAGAAACAGGCACGCACTAATACCTTCTTTAACTTCTTCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCTCGTGGGCTCGATATACGTGATGTGGACTGGATTGTGCAATATGATTCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGAGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCTTGATTCCTGAAGAGTTGCAATTACTTTGCTATCTAAAGGCAGCGAAGGTTCCTGTAAAAGAATATTTGTTTGATGAAAAGAAGCTGTCAAATGTACAATCTTACCTGTTGGCGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTTATTTACAGGTTCAGCTTTCACCTTACACTTGTCTGTGTTATAAGGATACTGAGTTTCAGATTGAGAAGGTGGTTGTCCAAGGAATAACAGCAAGACTTGCATCGTTAGACAGACAGCAGTGCTTCAAAGCATAG 1089 0.4022 MAMQIQARAIPPILIGKDVLGAASTVSGKTLAFLIPAVELLYHVLNSLHEMELVSLSYALLGSLQYRKELLKYHSQTLLLVIGGSARKGEAERIVKGVNLLVATPGILLDHLQNRKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILARILCQSFSNDGRTKIDCFNIHGKQKKQARTNTFFNFFKAEKGILLCTDVAARGLDIRDVDWIVQYDSPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQLLCYLKAAKVPVKEYLFDEKKLSNVQSYLLAGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLYLQVQLSPYTCLCYKDTEFQIEKVVVQGITARLASLDRQQCFKA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g2005 362 Pfam DEAD/DEAH box helicase 4 157 IPR011545 GO:0003676|GO:0005524
Lele21g2005 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 298 IPR027417 -
Lele21g2005 362 SMART DUF4217_3 276 324 IPR025313 -
Lele21g2005 362 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 122 275 IPR001650 -
Lele21g2005 362 Gene3D - 116 357 IPR027417 -
Lele21g2005 362 SMART ultradead3 3 188 IPR014001 -
Lele21g2005 362 CDD SF2_C_DEAD 140 246 - -
Lele21g2005 362 PANTHER RNA HELICASE 3 155 - -
Lele21g2005 362 Pfam Domain of unknown function (DUF4217) 285 320 IPR025313 -
Lele21g2005 362 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 127 135 IPR000629 -
Lele21g2005 362 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 10 178 IPR014001 -
Lele21g2005 362 Coils Coil 362 362 - -
Lele21g2005 362 SMART helicmild6 148 236 IPR001650 -
Lele21g2005 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g2005 Lele-ChrLele21 26917086 26921654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g2005 171 246 Eukaryotic Initiation Factors Gene Family AT5G11170 39.474 8.99e-12 63.9