Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g2002 ATGATCTTCTTGCGTCTTAGTTTTTCGATTGCTTTTGTCGTCGTCTATTTGCGCGTTCGGCAGTTTCAGGTTCTTCATCCTCATCGGCTCGACCCCTTAAGTGAAACGATGGACCCGATGGACATCATTGGGAAATCGAAGGAAGATGCTTCGCTTCCCAAAGCAACTATGACAAAAATTATTAAAGAAATGTTACCTCCTGATGTACGTGTTGCAAGAGATGCTCAAGATCTGTTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTGTCATCAGAGTCCAATGAAGTCTGCAGCAGAGAGGAGAAAAGGACAATTGCACCTGAGCATGTATTGAAGGCTTTAGAGGTTCTTGGATTTGGTGAGTATATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATTGAGACCATGCAGGACTCTCTAAAAGGAGGGAAATGGAGCAATGGAGCAGAAATGACGGAGGAGGAAGCTTTAGCAGAGCAGCAAAGGATGTTTGCGGAGGCACGTGCCAGAATGAATGGTGAGGCCATTGCTTCCAAGCAGCCAGACGCTGACCAGAGTTTAGAGAGCTGA 579 0.4473 MIFLRLSFSIAFVVVYLRVRQFQVLHPHRLDPLSETMDPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDADQSLES 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g2002 192 PANTHER PROTEIN DR1 HOMOLOG 37 191 IPR044255 -
Lele21g2002 192 SUPERFAMILY Histone-fold 48 179 IPR009072 GO:0046982
Lele21g2002 192 FunFam Negative cofactor 2 beta 42 179 - -
Lele21g2002 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 115 IPR003958 -
Lele21g2002 192 Gene3D Histone, subunit A 40 182 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g2002 Lele-ChrLele21 26907420 26910522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g2002 37 185 CCAAT-DR1 Transcription Factor Family AT5G23090 84.564 3.99e-92 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele21g2002 CBFD_NFYB_HMF 8.5e-22 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g2002 21 26907420 26910522 Lele21g2002 21 26907420 26910522 ECH
Lele21g2002 21 26907420 26910522 Lele23g0010 23 61781 64955 hybridization
Lele21g2002 21 26907420 26910522 Lele24g1919 24 23850779 23854301 hybridization