Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1989 ATGGGGTGCTCGTTTTCTGGGTTGAATGCATTGTATGACAACGTAAACGGTGGCACCGATGTGTGGATCAACGAGAACCGATTCCGCATCGTGAGGCAGCTCGAGGAAGGTGCCTTTTCGTACGTCTACTTGGTCAAGGAGGTGGTCACCGACTCCTCTCCCGCCTTAGCTGGCGGGGGTCTCTCTAAGAAGCTCAAAGACTCTTCCCATGTTTCCGACGATGGAACTTATGCTATGAAAAAGGTCTTCATTCAAAACAATGAACAGCTGGAGTTGGTGAAGGAGGAGATCCATGTTTCATCACTTTTCAGTCATCCTAATTTGCTTCCACTTCTTGATCATGCAATCATTTCTGTTAAGCCAACCAAAGAAACATCTTGGGACCATGAAGCATATTTGTTATTTCCTGTTCATTTGGATGGAACATTGCTTGACATTGCCCAAACTATGAAAGCCAAGAAAGAGTTCTTTTCCACGTCAGATGTGCTTCACATATTTCAGCAGCTTGCTGCAGGACTCAAGCACATGCACAATATGGATCCTCCGCATGCACATAATGATGTCAAACCTGGTAATGTGGTAATAACACGCAGTAAAGGACAACCACCTCTTGCCATTCTCATGGACTTTGGTAGTGCTCGACCTGCCAGGAGGCAAATTCGCTCCCGATCAGAGGCTCTACTGTTGCAGGAATGGGCAGCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTATGGGATTGCCCAAGCCATTCTGATATAGATGAGAGGACTGATGTTTGGTCACTAGGATGCACGCTGTATGCAATAATGTACGGGGTATCTCCATTTGAATATGCACTTGGAGAATCTGGGGAAAGCCTGCAACTGACCATTGTAAATGCTCAGATCAAATGGCCGGCTGGACCTAAGTCTCCATATCCTGATGCTCTTCATCAGTTCGTGACATGGATGCTTCAACCTCAGGCTGCTGTGCGGCCTCGAATAGACGATATCGTTATCCATGTTGGAAAATTGATAGCCAAGTGTTTTGTTTTCTTAATAAACATAGGAAATACTGTAAAGAGATGGACTGTTGGAATACCAGGTGGTAAAGACCTGATAGCCATCATACGAGCCTTTGGGAGAATTAGTCGTCAAGGTTTTTCTTCTAGTCACATTGGGTGTTCTTTTGCTCATCAGTGTCCAAACAATATAAGGCTGCTATTATCCGAATTGACAGTCCTGGTTGTGATGCCCTTGCTTCTGATTTGATATCGCCTCATTGATGTTGCTGGAAGTGGAGGAAAATTTAACTTGGGGAAACTGTATGAGAAGATTGGCTTCAACAAGGAAATTATATCAAGGGGAAAATATGCTGAGGTCCTTGCTGCTGAACAACGTCCTTTCAGCAAGTCATTTGGGGACTGCATGATACTTCTAAAAGTACTTAATGTCAAATTGATATGTGGTCCATACACTGAAGGGCTTGAAGCTGCTGGGCCTAAGGTGTTACAGAAATTAAGCAATCGAAGAAGGCTTGCTTTCTCCTCAAACTCGCTCTTATACGTAGAGAGGATGGAGGAGGTTGCACAGGGGAGAGTTTGGACTGGAAAAGACGCAGCTTCCCATGGTTTAGTTGATGCTATTGGCGGGCTTTCTCGAGCTATTGCCATAGCGAAATTGAAGGCTAATATAACTCAAGACAAACAGGTGACTCTCATGGAACTTTCCCGACCTTCTCTTGCAGAGATTTTAAGTGGTGCGGGGTTTGCCCTAGTTGAAGTAGATAATACATTGAAGGAACTGCTTCAGGACTCGTCATTTTCTGATGGAGTTCAAGCCCGGACGGAAGGAATCATGCTTGAGAGATTGGAAGGATATGCTCTCCCTAACCCCATTTTGAGGCAGATGAAGGAGTTCCATAGTTCCTGTAGCTTTTGTTGA 1929 0.45 MGCSFSGLNALYDNVNGGTDVWINENRFRIVRQLEEGAFSYVYLVKEVVTDSSPALAGGGLSKKLKDSSHVSDDGTYAMKKVFIQNNEQLELVKEEIHVSSLFSHPNLLPLLDHAIISVKPTKETSWDHEAYLLFPVHLDGTLLDIAQTMKAKKEFFSTSDVLHIFQQLAAGLKHMHNMDPPHAHNDVKPGNVVITRSKGQPPLAILMDFGSARPARRQIRSRSEALLLQEWAAEHCSAPFRAPELWDCPSHSDIDERTDVWSLGCTLYAIMYGVSPFEYALGESGESLQLTIVNAQIKWPAGPKSPYPDALHQFVTWMLQPQAAVRPRIDDIVIHVGKLIAKCFVFLINIGNTVKRWTVGIPGGKDLIAIIRAFGRISRQGFSSSHIGCSFAHQCPNNIRLLLSELTVLVVMPLLLIXYRLIDVAGSGGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFSKSFGDCMILLKVLNVKLICGPYTEGLEAAGPKVLQKLSNRRRLAFSSNSLLYVERMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANITQDKQVTLMELSRPSLAEILSGAGFALVEVDNTLKELLQDSSFSDGVQARTEGIMLERLEGYALPNPILRQMKEFHSSCSFC 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1989 642 Pfam Peptidase family S49 515 560 IPR002142 GO:0006508|GO:0008233
Lele21g1989 642 ProSiteProfiles Protein kinase domain profile. 28 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1989 642 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 343 - -
Lele21g1989 642 CDD STKc_16 27 342 - -
Lele21g1989 642 SMART serkin_6 28 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1989 642 Gene3D - 487 607 - -
Lele21g1989 642 Pfam Protein kinase domain 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1989 642 Gene3D Transferase(Phosphotransferase) domain 1 14 345 - -
Lele21g1989 642 SUPERFAMILY Protein kinase-like (PK-like) 19 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1989 Lele-ChrLele21 26828752 26839159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1989 33 299 EF-hand Containing Proteins AT4G04710 25.000 1.13e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lele21g1989 Pkinase 6.7e-29 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1989 21 26828752 26839159 Lele21g1989 21 26828752 26839159 ECH
Lele21g1989 21 26828752 26839159 Lele23g0023 23 135338 145414 hybridization
Lele21g1989 21 26828752 26839159 Lele24g1908 24 23778870 23786204 hybridization