Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1976 ATGGGGCGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACCTTCAGCAAGAGAAGGTCCGGCCTAGTAAAGAAAGCCAAAGAGATCTCTGTGCTCTGCGATGCCGAGGTCGCTCTCATCGTCTTCTCCACCAAAGGCAAGCTCTTCCACTTCTCCAGCGACCCCTGTATGGAAAGAATTTTGGAACGATACGAGAGGTATTCCTACGCAGAGAGGCAGCTTGCTGCAAATGATCAGGAACCCAATTTTCAGGAAAACTGGGCTTTGCAACACGCGAAGTTGAAGGCAAGGATAGAGGTCCTACAAAGAAATCAAAGGCGTTTTATGGGAGAAGATCTGGAGGCCTTAAGTCTGAAAGAGCTTCAGAATTTGGAGCATCAGCTGGAGTCAGCTCTGAAACACATAAGATCACGAACGAACCGGCTGATGAACGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTGCAGGAACAAAACAACGTACTCGCTAGGAAGATAAGGGAAAGGGAGAAGGCAGTAGTGGAGCAGCAGCAGAATGAAGGTTTGGATGATTCCTCTGTTCTGTTAACACAACACCCATTGCTGCCTTTGAATATCATCGGAGGATCAAGAGGTGAGGGTGTAGATTATGGAGCCAGTGTGGATGAGTCTCGACCCAATAACGCACTGCTGCCTTGGATGCTTCGCCCTCTCAGTGACTAG 726 0.4848 MGRGRVELKRIENKINRQVTFSKRRSGLVKKAKEISVLCDAEVALIVFSTKGKLFHFSSDPCMERILERYERYSYAERQLAANDQEPNFQENWALQHAKLKARIEVLQRNQRRFMGEDLEALSLKELQNLEHQLESALKHIRSRTNRLMNESISELQKKDKALQEQNNVLARKIREREKAVVEQQQNEGLDDSSVLLTQHPLLPLNIIGGSRGEGVDYGASVDESRPNNALLPWMLRPLSD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1976 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lele21g1976 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 Coils Coil 90 110 - -
Lele21g1976 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele21g1976 241 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Lele21g1976 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Lele21g1976 241 Coils Coil 124 173 - -
Lele21g1976 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lele21g1976 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele21g1976 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele21g1976 241 Pfam K-box region 88 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1976 Lele-ChrLele21 26745967 26748905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1976 1 193 MADS-box Gene Family AT1G26310 67.526 8.52e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele21g1976 K-box 8.5e-27 No_clan