Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1970 ATGGGCTCAACAAGTGAAACAGCTCCTCTCTTACAGCGCAAGGAAGAGGGAAAGAGCAACAGAGCTCCATTGAATGAACTGACAGACCTCGAACGAGGTGATGAAGTAGCAAATGTGGGATTTGTCAGGGTGCTTTCACTTGCAAAGCCTGAAGCTGGGAAGCTGATATTCGCAACACTGGCTCTTTTAATTGCATCCACATCAGATATTTTAATTCCAAAATTTGGTGGGAAGATAATTGATATCGTCTCAGGAGATATTCAAACTCCCGAAGATAAAGCTAAAGCTTTGGAAGCTGTCAGGAACACTATACTTTACATTTTTCTGATTGTTGTTGTTGGATCAGTTTCAACAGCACTTGATGGTTGGCTTTTTTCCTCAGCTAGTGAAAGGGTTGTTGCTAGGCTTAGAGAAAGATTATTTAGTCACCTCATAATCCAGGAGATAGCCTTCTTTGATGTTACCCGTACCGGGGAACTTATGAGCAGGATATCTGAAGATACACAGATCATAAAAGATGCAGCAACTACCAATCTTTCTCATGTGCTGAGTAGCTTATCGACTGCATTTATTGGTCTTGGCTTCATGTTTTTGACGTCATGGAAGTTAACATTGTTGGCTTTAGCTGTTGTGCCTGCTACTTTTATAGCTGCACGTAAATTTGGATGGTTCCTGCGTGAACTTTCTCAGAAAACTCAAGATGCAGCTGCAGCAGCTGCTTCAGTAGCTGAGGAATCCTTTGGTGCCATAAGGACGGTAAGATCTTTCGCCCAAGAAGAATATGAAGTATCTCGCTACTCTAAGAAAGTTGATGAGACACTTAAGCTTGGACTTAAACAAGCTGAAGTTGAGGGACTCTTTTCTGGAGGCATCTATACAGCTATTTCACTGCCAATTATTGTAATTGTTATATATGGGGCTTATTTGACAATTACAGATTCCATGACCCCTGGTGATCTTACGTCTTTCATTCTTTATAGTCTCACAGTGGGGCCTTCTATATCTGGCCTCTCAGGATTGTATACCATAGCTATGAAAGCTGTGGGTGCAAGCAGACGGGTGTTTCACCTTCTTGATCGTGTATCATCAATGCCAAGGTCGGGAAGTAAATGTCCTCTGGGAGAACAAGATGGTGAGTTGGAGCTAGATGATGTCTGGTTTGCATATCCATCTCGTCCCAGTCATATGGTACTTAAGGGAATTACAATGAAATTGGAGCCCGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACTACAATAGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGACAGATCCTGCTAAATGGGGTTCCACTGGTAGAAGTTTCACATAAGCATCTTCACAAGAAGATCAGTATTGTGAGTCAGGAGCCTGTACTTTTCAACTGCTCCATTGAGGAGAACATAGCTTATGGATTTGATGGCAAAGCTAATCCTGCTGATATAGAAAATGCAGCTAAAATGGCAAATGCACATGACTTCATATCAAAATTCACAGATAAATACCAGACCCATGTTGGGGAGCGTGGGTTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATCGCCAGAGCTTTGCTTATGGACCCAAAAGTTCTTCTCCTGGATGAAGCCACTAGTGCCCTGGATGCTGAAAGCGAATATTTAGTACAGGATGCTATGGAACGACTGATGAAGGGAAGGACAGTTCTAGTTATTGCTCACAGGCTATCAACTGTGAAGAGTGCAGATACAGTTGTAGTTGTCTGTGATGGTGAAATTGTGGAGAGTGGCAGCCATGAACACCTTCTCAACAACATTAATGGTGTCTATTCTGCATTAGTCAGCAGACAGCTACAAGCAATGAAACCTCAATATCTTGTGTCTTAG 1893 0.4247 MGSTSETAPLLQRKEEGKSNRAPLNELTDLERGDEVANVGFVRVLSLAKPEAGKLIFATLALLIASTSDILIPKFGGKIIDIVSGDIQTPEDKAKALEAVRNTILYIFLIVVVGSVSTALDGWLFSSASERVVARLRERLFSHLIIQEIAFFDVTRTGELMSRISEDTQIIKDAATTNLSHVLSSLSTAFIGLGFMFLTSWKLTLLALAVVPATFIAARKFGWFLRELSQKTQDAAAAAASVAEESFGAIRTVRSFAQEEYEVSRYSKKVDETLKLGLKQAEVEGLFSGGIYTAISLPIIVIVIYGAYLTITDSMTPGDLTSFILYSLTVGPSISGLSGLYTIAMKAVGASRRVFHLLDRVSSMPRSGSKCPLGEQDGELELDDVWFAYPSRPSHMVLKGITMKLEPGSKVALVGPSGGGKTTIANLIERFYDPTKGQILLNGVPLVEVSHKHLHKKISIVSQEPVLFNCSIEENIAYGFDGKANPADIENAAKMANAHDFISKFTDKYQTHVGERGLRLSGGQKQRIAIARALLMDPKVLLLDEATSALDAESEYLVQDAMERLMKGRTVLVIAHRLSTVKSADTVVVVCDGEIVESGSHEHLLNNINGVYSALVSRQLQAMKPQYLVS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1970 630 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele21g1970 630 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Lele21g1970 630 Gene3D - 378 621 IPR027417 -
Lele21g1970 630 CDD ABC_MTABC3_MDL1_MDL2 381 619 - -
Lele21g1970 630 CDD ABC_6TM_AtABCB27_like 58 354 - -
Lele21g1970 630 FunFam ABC transporter B family member 25 107 377 - -
Lele21g1970 630 Pfam ABC transporter transmembrane region 55 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele21g1970 630 MobiDBLite consensus disorder prediction 1 22 - -
Lele21g1970 630 FunFam ABC transporter B family member 25 378 621 - -
Lele21g1970 630 SUPERFAMILY ABC transporter transmembrane region 43 359 IPR036640 GO:0005524|GO:0016020
Lele21g1970 630 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 37 623 - -
Lele21g1970 630 Pfam ABC transporter 398 548 IPR003439 GO:0005524
Lele21g1970 630 Gene3D ABC transporter type 1, transmembrane domain 105 377 IPR036640 GO:0005524|GO:0016020
Lele21g1970 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Lele21g1970 630 SMART AAA_5 407 594 IPR003593 -
Lele21g1970 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 619 IPR027417 -
Lele21g1970 630 PIRSF ABC_prm/ATPase_B 3 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1970 Lele-ChrLele21 26691151 26696705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1970 72 619 Calmodulin-binding Proteins AT2G36910 38.378 1.16e-103 340