Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1961 ATGTCTCAGTCAGTGACTCCGGATGCGATTTCGATCTTGTATGCCAATCCGTCCCTGGATTCTTCACCGGAGCTTCCCGATATTGTAGTCCAAGTCCTGGATCTCAAGCAAAGCGGTAACAGATATATGTTTACTGCAAGCGATGGTAGGTTAAAATTAAGAGCAATTCTACCCTCAAGTCAGAATTCTCAGGTCCTCTCAGGAAATATTCAGAACCTGTGTCTTATTCGCATAATTGACTATACTCTCAACGACATCCCAAATAAGTCAGAGAAGTATCTTATTGTGACAAACTGTAAACCAGTCTCCCCTGCACTTGAAACGGAAATAAAGCTTGAGGTAAAGAGTGAGGTAAAGGGTCTCCCCTGCATTATTTCAAAACGAGAGCAAGAGGAAGAAATGAAAAGTCAGGTGAAAACTGAAGGAGCAGGCCTTCTTTTGAAACCAAAGCAAGACATAGTGGCCAAATCTGCTGCTCAGATCGTACATGAACAACACGGAAATATGGTCCCTGCTGCTCGACTGGCCATGACTCGCAGGGTGCGTCCTCTGGTTTCCTTGAACCCTTATCAGGGTAACTGGACAATAAAAGTTCGGGTTACAAACAAAGGAATCATGCGCACCTATAAGAATGCAAGAGGGGAAGGTTGTGTCTTCAACGTGGAACTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAAGCTGCAAGGAAATTCTATGAAAAATTTGTGTTGGGGAAGGTTTACTACATTTCAAAGGGTACTTTAAAAGTTGCTAGCAAGCAGTTTAAAACTGTTCAAAATGATTATGAAATGACACTAAACGAGAACTCTGAAGTGGAAGAGGCATCCGGTGAAGAAAGTTTTGTTCCAGAGACAAGGTTCAAGTTTGTCCCGATTGATCAGCTGGGTCCGTATGTCAACAGAAATGAACTTGTCGATGTCATTGGAATTGTTCAAAATGTATCTCCTACGATGAGCATACGCAGAAAGAGCAACAATGAAACTGTCCCGAAGCGTGATATCACTATTGCTGATGAGACAAAGAAAACAGTTGTTGTGTCTTTGTGGAATGAGAACGCGACTGATGTAGGGCAAGAATTGTTGGACCTTGCTGGTAGTTCTCCTTTAGTAGCAATCAAATCACTCAAGGTTGGGGACTTTCAAGGTGTTTCCTTATCAACTATAAATAAAAGTCTAGTGCTGGTAAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTACGAATCGGAAGGTAAAGATGTATCATTGGCATCCATAAGTTCTAGCACGAGTCCAGCATCCATGAATGGAATGAGATCAGTGTATTCAGACCGTGTTTCACTTTCTCATATTACCTCAAATCCATCCTTAGGGGAGGACAAGCCTGCATTGTTCAGCATTAGGGCACATATAAGCTATATCAAGCCTGACAAGACAATGTGGTACCGAGCCTGTAAAACTTGCAACAAGAAAATCACCGAATCCATTGGCGCTGGGTATTGGTGTGAAGGCTGCCAGAAAAATTATGAAGAGTGCAATTTAAGATACATTATGGTTGTGCGAGTTACTGATAGAAGTGGGGAAGCCTTTGTCTCAGTCTTCAATGAAGAGGCTGAGAAGATTGTTGGGTGCTCTGCTGAAGAACTTGATAGCCTAAAGTCACAGGAGGGGGAAGATAATCCATATCAGTTGAAACTGAAACAAGCAACATGGACTCCTTATCTTTTCCGGGTCAGTGTTTCTCAAAATGAGTATAATAATGAGAAAAGGCAAAGGATAACAGCCCGGGCAGTTGTTCCGATGGACTTTGCTGCTGAGTCAAGATTTCTCTTGGAAGAGATATCAAAGATGGGAGTTTCTCAATAA 1887 0.4213 MSQSVTPDAISILYANPSLDSSPELPDIVVQVLDLKQSGNRYMFTASDGRLKLRAILPSSQNSQVLSGNIQNLCLIRIIDYTLNDIPNKSEKYLIVTNCKPVSPALETEIKLEVKSEVKGLPCIISKREQEEEMKSQVKTEGAGLLLKPKQDIVAKSAAQIVHEQHGNMVPAARLAMTRRVRPLVSLNPYQGNWTIKVRVTNKGIMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVASKQFKTVQNDYEMTLNENSEVEEASGEESFVPETRFKFVPIDQLGPYVNRNELVDVIGIVQNVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWNENATDVGQELLDLAGSSPLVAIKSLKVGDFQGVSLSTINKSLVLVNPDIPEAKKLRCWYESEGKDVSLASISSSTSPASMNGMRSVYSDRVSLSHITSNPSLGEDKPALFSIRAHISYIKPDKTMWYRACKTCNKKITESIGAGYWCEGCQKNYEECNLRYIMVVRVTDRSGEAFVSVFNEEAEKIVGCSAEELDSLKSQEGEDNPYQLKLKQATWTPYLFRVSVSQNEYNNEKRQRITARAVVPMDFAAESRFLLEEISKMGVSQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1961 628 CDD RPA1_DBD_B 316 422 - -
Lele21g1961 628 CDD RPA1_DBD_A 183 286 - -
Lele21g1961 628 FunFam Replication protein A subunit 180 289 - -
Lele21g1961 628 Pfam Replication factor-A C terminal domain 472 617 IPR013955 -
Lele21g1961 628 Gene3D - 294 434 IPR012340 -
Lele21g1961 628 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele21g1961 628 PANTHER REPLICATION FACTOR A 1, RFA1 194 587 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele21g1961 628 Pfam Replication protein A OB domain 311 408 IPR031657 -
Lele21g1961 628 CDD RPA1_DBD_C 455 623 IPR013955 -
Lele21g1961 628 Pfam OB-fold nucleic acid binding domain 194 280 IPR004365 GO:0003676
Lele21g1961 628 Gene3D - 4 112 IPR012340 -
Lele21g1961 628 FunFam Replication protein A subunit 4 114 - -
Lele21g1961 628 SUPERFAMILY Nucleic acid-binding proteins 182 289 IPR012340 -
Lele21g1961 628 SUPERFAMILY Nucleic acid-binding proteins 450 624 IPR012340 -
Lele21g1961 628 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele21g1961 628 FunFam Replication protein A subunit 293 432 - -
Lele21g1961 628 Gene3D - 435 624 IPR012340 -
Lele21g1961 628 Gene3D - 180 289 IPR012340 -
Lele21g1961 628 SUPERFAMILY Nucleic acid-binding proteins 299 428 IPR012340 -
Lele21g1961 628 FunFam Replication protein A subunit 437 624 - -
Lele21g1961 628 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1961 Lele-ChrLele21 26638902 26642906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1961 1 628 Core DNA Replication Machinery Family AT5G08020 65.660 0.0 893