Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1926 ATGTCGGACGAAGAACATCACTTTGAATCTAAGGCCGACGCCGGAGCCTCCAAGACTTATCCTCAACAAGCCGGCACCATTCGTAAAAACGGCTATATCGTCATCAAGAACCGCCCCTGCAAGGTGTCTCTCTTTTCTATCGATTCATTTGCTTCTTTTCTTTTCACTCTGTTCATTTCCTGCAAAATTCTTCCTGAAATGATTGTTGTTGAAGTGTCGACCTCCAAGACCGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGCAATTGATATCTTCACTAACAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCATGTGAACCGTACTGATTATCAACTCATTGATATTTCTGAGGATGGATTTGTTAGTCTTCTTACTGAAAATGGGAATACCAAAGATGATCTGAGGCTTCCTACCGATGAGAATCTGCTTAATCCGATAAAGGAAGGATTTGAGAGTGGAAAGGACCTTGTTGTTTCTGTCATGTCCGCTATGGGGGAGGAGCAGATTTGTGGCTTGAAGGATATTGGGCCAAAGTAG 561 0.4349 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVSLFSIDSFASFLFTLFISCKILPEMIVVEVSTSKTGKHGHAKCHFVAIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLNPIKEGFESGKDLVVSVMSAMGEEQICGLKDIGPK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1926 186 PIRSF Transl_init_eIF5A 1 49 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele21g1926 186 PIRSF Transl_init_eIF5A 60 184 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele21g1926 186 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 184 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele21g1926 186 CDD S1_eIF5A 113 183 - -
Lele21g1926 186 Gene3D - 59 111 IPR014722 -
Lele21g1926 186 FunFam Eukaryotic translation initiation factor 5A 113 185 - -
Lele21g1926 186 SUPERFAMILY Translation proteins SH3-like domain 15 46 IPR008991 -
Lele21g1926 186 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 77 84 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele21g1926 186 Gene3D - 113 185 IPR012340 -
Lele21g1926 186 MobiDBLite consensus disorder prediction 1 20 - -
Lele21g1926 186 SUPERFAMILY Nucleic acid-binding proteins 113 183 IPR012340 -
Lele21g1926 186 TIGRFAM eIF_5A: translation elongation factor IF5A 69 179 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele21g1926 186 SMART eIF_5a_2 112 181 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele21g1926 186 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 112 181 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele21g1926 186 SUPERFAMILY Translation proteins SH3-like domain 69 120 IPR008991 -
Lele21g1926 186 Gene3D - 1 49 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1926 Lele-ChrLele21 26440706 26441931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1926 1 186 Eukaryotic Initiation Factors Gene Family AT1G13950 76.344 4.15e-98 279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1926 21 26440706 26441931 Lele21g1926 21 26440706 26441931 ECH
Lele21g1926 21 26440706 26441931 Lele23g0086 23 556173 557402 hybridization
Lele21g1926 21 26440706 26441931 Lele24g1844 24 23358323 23359505 hybridization