LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1925	ATGGGTTGTGTGAATGCGAAGCAGGCGGTGTCGGTGACGCCTGCTATTGACCACTCCGGTGTGTTTCGTGGCAATGCGGGTGCGGGAAATTCGGGAAGGAATTTAGGAGAGTCTGACAAGAAGAAGAAGAGTGAGTCAGTGGGGCTGAGTAGAAGCGAGGTGGGTGAATCGGGAAGGGCGAGTTCGAATGGAGGTTGTGACTCGTATAGTTTCAGATTGGGGAATCTGCAAAAGTACGTAGAAAGAGAGCAAGTAGCAGCGGGTTGGCCGGGTTGGCTTACCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTGCCCCTCCGAGCCGATGCGTTTGAGAAACTTGAGAAGATCGGACAAGGAACATACAGCAGTGTCTTCCGAGCGCGAGAACTAGAGACGGGTAAGATAGTGGCTCTGAAGAAGGTGCGGTTTGACAACTTTGAGCCCGAAAGTGTTAGGTTCATGGCTCGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCCAAATTGTCCTGTAGCATATATCTTGTGTTCGAGTATATGGAACATGACATTACAGGGCTCATATCTTCCCCCGATATCAAATTTAGTGAACCGCAGATTAAATGCTACATGAAGCAGTTGTTATCTGGACTTGACCATTGTCATTCACGCGGTGTAATGCACCGTGACATTAAGGGATCTAATCTTCTAGTGAATAATGAAGGGATACTAAAGGTGGCAGATTTTGGACTGGCGAACTTTTCAAATTCTGGGCACAAACAGCCCCTCACTAGTCGTGTAGTTACATTGTGGTACCGTCCTCCTGAACTTTTACTGGGTTCAACAGACTATGGTCCTTCTGTGGATCTCTGGAGCATTGGCTGTGTATTTGCTGAACTACTTGTTGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTGTGTGGCTCTCCACCTGAAGAATACTGGAAAAAGTCTAGACTCCCTCATGCAACGTTGTTTAGGCCACAGCAACCATATAATAGTTGTCTCCGAGAGACCTTTAAAGATTTGCATCCAACTAGCGTGAACTTGCTACAGACTCTTCTTTCCATCGAACCATACAAACGTGGAACTGCCTCCTCTGCTCTCTCATCAGAGTATTTCAAAACAAAGCCATATGCTTGTGAGCCATCAAGCTTGCCGGTATATCCACCTACCAAGGAGATTGATGTGAAACAGCGGGAAGAGTCAAGAAGGAAAAAGATTGGTGGAAGAGCACGCGGACCTGAAACAAGAAAACCTTCAAGAAAGCCATTAGGATTCAACAAATTAGTGCTAACAGAGGATTTGGCAAGTCAAACCCAGAAATTCCAAAGGGTTAATGGCAGGTCAGTCCACATCCTTAAAGAAGGGAGCACCGATGTAGTTAAGGAGGAACCAAAGCCATCTAGTGGGAAACCAGATGATGCCTCCCATTCGAAGAATGCATCTCCAGGAGATATTCCCTTTTCTGGGCCATTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGACGTAAAGATGACATTTCAATAAGATCCCACTGTCGATCTATTTCAAGGGGGCATATTGTCAATCCGTTAGAGTTTTCTGTACCAAATTCAATGAATAACTTTGATTCCAGAAACATGGAAAATAAGGATTGTCTGGGACGCTCCAACTCTCGGAGTCATGATCCACTTGAAATCCCTAAGCTTACCATGCAAAATCAATGGAGCAAGTTTGATCGCCCAGATTCTTTTGATGCTTCTGACGAATACCACTCACAGGAGCTATCTATGGCACTTTATCATAGAGAGGATTCAATATCCAAGAGAAGTAACCTGAGTTATCTGGATCAAGCAGAGAAGGTTGAGTTTTCAGGGCCCCTGCTATCTCAAATGCGTACTGTTGATGAGCTCTTGGAAAAACATGAGCGCCACATCCGCCGAACAGTCCGAAGATCTTGGTTTCAAAGAGGTAGGAAGCAAGGGAAGCAAGTGTAA	2055	0.4555	MGCVNAKQAVSVTPAIDHSGVFRGNAGAGNSGRNLGESDKKKKSESVGLSRSEVGESGRASSNGGCDSYSFRLGNLQKYVEREQVAAGWPGWLTAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLISSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGHKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSRLPHATLFRPQQPYNSCLRETFKDLHPTSVNLLQTLLSIEPYKRGTASSALSSEYFKTKPYACEPSSLPVYPPTKEIDVKQREESRRKKIGGRARGPETRKPSRKPLGFNKLVLTEDLASQTQKFQRVNGRSVHILKEGSTDVVKEEPKPSSGKPDDASHSKNASPGDIPFSGPLQVSTSSGFAWAKRRKDDISIRSHCRSISRGHIVNPLEFSVPNSMNNFDSRNMENKDCLGRSNSRSHDPLEIPKLTMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSISKRSNLSYLDQAEKVEFSGPLLSQMRTVDELLEKHERHIRRTVRRSWFQRGRKQGKQV	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1925	684	MobiDBLite	consensus disorder prediction	476	515	-	-
	Lele21g1925	684	MobiDBLite	consensus disorder prediction	410	448	-	-
	Lele21g1925	684	Gene3D	Phosphorylase Kinase; domain 1	99	194	-	-
	Lele21g1925	684	Pfam	Protein kinase domain	112	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g1925	684	SMART	serkin_6	112	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g1925	684	MobiDBLite	consensus disorder prediction	21	63	-	-
	Lele21g1925	684	PANTHER	CELL DIVISION PROTEIN KINASE	110	400	-	-
	Lele21g1925	684	MobiDBLite	consensus disorder prediction	478	496	-	-
	Lele21g1925	684	MobiDBLite	consensus disorder prediction	416	445	-	-
	Lele21g1925	684	ProSitePatterns	Protein kinases ATP-binding region signature.	118	141	IPR017441	GO:0005524
	Lele21g1925	684	CDD	STKc_CDK9_like	112	396	-	-
	Lele21g1925	684	MobiDBLite	consensus disorder prediction	35	49	-	-
	Lele21g1925	684	ProSiteProfiles	Protein kinase domain profile.	112	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g1925	684	FunFam	probable serine/threonine-protein kinase At1g54610	195	435	-	-
	Lele21g1925	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	232	244	IPR008271	GO:0004672\|GO:0006468
	Lele21g1925	684	FunFam	probable serine/threonine-protein kinase At1g54610	99	194	-	-
	Lele21g1925	684	Gene3D	Transferase(Phosphotransferase) domain 1	195	435	-	-
	Lele21g1925	684	SUPERFAMILY	Protein kinase-like (PK-like)	106	401	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1925	Lele-ChrLele21	26424647	26429409	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1925	104	428	Core Cell Cycle Gene Families	AT5G10270	50.733	1.06e-114	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lele21g1925		Pkinase	1.2e-68	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1925	21	26424647	26429409	Lele23g0088	23	572662	577385	hybridization
	Lele21g1925	21	26424647	26429409	Lele24g1842	24	23339798	23344821	hybridization