Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1921 ATGGCGGAGGAGGAATCGGCTCCACCTCCAACTGTGTTGAGCAGGGAGTGTCTTGACGATGTGGAGGACTACGTATTGGCATCTGAACCAGAGGGTTTGACAAGGGAAACATACCAGCATGTTTTTGAACTTGTGCAAAACGGCAATATGGCATTTCGGGATAAGCGTATGGAAGAGGCGATCAACTTTTACTCTAGAGCAAATAGCATCAAGACTGGTGATCCTGTTATACTCAGCAACCGAAGTGCTGCTTATATCTGGGTTAGCCTATTTTTAAAAGACAGACCACCATCAGCTTCAGAAGATAGTCCGCTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCGAAGTAGTTCAGTAAAATCATACCTTTTAATGGCCAATGCTCATTTTCTGTTGGAGAAATATGAGATGGCTCGGGATGTTATTCTTTCAGGCCTTCAGGTTTATCCATATAGTCATTCTCTCCGGGTGTCTCTTTCAAATCTGGAAAGAGCATTGGCTAGTTTGGCTAGGATGAGAACACATGGACAGCCAAAGCGCACTGATGACTTTGATTGCACGGTTTGCCTCAAGCTACTTTATGAACCAGTTACAACCCCTTGTGGACATTCTTTTTGTCGGTCATGTCTATTTCAGACAATGGATCGTGGCAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAAAACATTATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGATAATGACAGTTTGACTAACTTGGGCTTAGATTTGATCCCTCTTTTTGTCATGGATGTTGTCATTCCATGTCAAAAGTTTCCACTCCATATATTTGAACCGCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATACTCGATTCTGCAACAGATTCCCTAGCTGAGTTTGCATGTGAAGTGGAAATTACTGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCGCATCATCCGATCGTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATTCAGGATATTATGCCATTGGAAGGTACACAAGAGAGAGAAGATTTACAGGAAATAACAAATAATGCAGCAGAAAGTGCTCGGTCATGGATCAGAAGGGCTAAAGAAGCAGCAGGACTAGATCAAAGAAGACTCGAGAGACTGTTGAATGCTGAAGTGATGATGCCCCCGCTACAAGACCCTGAGCGCTTCAGTTTCTGGCTTGCAACCTTATCAAACCGGAGGCCTTCGGAAAAACTGGATCTCCTTCGCTTGAGAGATACCAAAGAGAGGATCAGGCGGGGTTTGATATTTCTGCGAGCAGAGGAACAAGGCTGCAGAATCCAGTAA 1470 0.4381 MAEEESAPPPTVLSRECLDDVEDYVLASEPEGLTRETYQHVFELVQNGNMAFRDKRMEEAINFYSRANSIKTGDPVILSNRSAAYIWVSLFLKDRPPSASEDSPLSGLDPTTHAELGLKDAEKLVNIRSSSVKSYLLMANAHFLLEKYEMARDVILSGLQVYPYSHSLRVSLSNLERALASLARMRTHGQPKRTDDFDCTVCLKLLYEPVTTPCGHSFCRSCLFQTMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQDNDSLTNLGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVILDSATDSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPLEGTQEREDLQEITNNAAESARSWIRRAKEAAGLDQRRLERLLNAEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLRDTKERIRRGLIFLRAEEQGCRIQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1921 489 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 479 IPR003111 -
Lele21g1921 489 Gene3D Tetratricopeptide repeat domain 29 181 IPR011990 GO:0005515
Lele21g1921 489 SMART lon_5 282 481 IPR003111 -
Lele21g1921 489 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Lele21g1921 489 Gene3D - 281 383 IPR046336 -
Lele21g1921 489 PANTHER RING FINGER PROTEIN 127 22 481 - -
Lele21g1921 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 278 IPR013083 -
Lele21g1921 489 ProSiteProfiles Lon N-terminal domain profile. 280 481 IPR003111 -
Lele21g1921 489 SUPERFAMILY TPR-like 39 179 IPR011990 GO:0005515
Lele21g1921 489 SMART ring_2 199 236 IPR001841 -
Lele21g1921 489 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Lele21g1921 489 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Lele21g1921 489 SUPERFAMILY PUA domain-like 283 479 IPR015947 -
Lele21g1921 489 SUPERFAMILY RING/U-box 194 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1921 Lele-ChrLele21 26389258 26397350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1921 187 240 C3H Transcription Factor Family AT1G74990 35.088 1.85e-09 54.3