Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1915 ATGCACTTATATGAACTCAGTCTGAGGCTGCTGCTGAGAAGCGTAGTTTGTGTAGAATATGTGTGTAGAATATTTTTGGTGGGTCGGCACTTTAACGTCTCATGTTGTAAAGCTACTATGCTTTGTTACCATAAAAGGATAAGCGACGCAAGTTTCTTTGTCACTGCTACGGTGATTACCGTTATTATGGAAGCTGAAGAGATCGAAAGAGTTGGGAGGTTCCATTTTGTATCCAAGTTGATACTATCCACCATTTCTGGGGCTCTGACGGGATGTTTTGCCATTGCTGGAGCCATCACAGGAGCTATAGCTGGTGTATTGGCCAGTAGGGCTTCTGATAGCGGTTTCCTCCGTGGAGCTTCATTGGGGGCCATTGCTGGGGCTATAATATCTGTTGAGGTGTTAGAAGCTTCCCGTGCCTACTGGTGTTTAGAGCAAACTGGCTCAAGGAGCGCATCATCCATGAATCTAGGAGGCTGTCTTTATTCTTTAGCAATAAATCAATTCTCTACCATTTGGATCCAGGCAGATTTCATGGAGCAACTTGTTCGTGGGAGGCTTGTAGAGGAACAATTTTCACCAGCTATACTAACTGCTTACAGTTGGCAGGTTGAGGCTGCTGATACAGGCTATGATGAGATTCCTGAGGTTCTTAGCTTAGTTTCACCTAGAGTATTATCTGGGGATTCGTTGAAGAAGTTACCGCACCATGTTATCTTAAAGGACATGAAGACGGAGAATCTCTGCTGCACAATATGTTTGCAGGATTTTGAAGTTGAAGAGGTTGCAAGGAGCTTACCTCGATGTCGACATACGTTTCACTTGAACTGTGTTGACCGATGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAGTATGTATAG 888 0.4426 MHLYELSLRLLLRSVVCVEYVCRIFLVGRHFNVSCCKATMLCYHKRISDASFFVTATVITVIMEAEEIERVGRFHFVSKLILSTISGALTGCFAIAGAITGAIAGVLASRASDSGFLRGASLGAIAGAIISVEVLEASRAYWCLEQTGSRSASSMNLGGCLYSLAINQFSTIWIQADFMEQLVRGRLVEEQFSPAILTAYSWQVEAADTGYDEIPEVLSLVSPRVLSGDSLKKLPHHVILKDMKTENLCCTICLQDFEVEEVARSLPRCRHTFHLNCVDRWLVKNDSCPVCRQYV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1915 295 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 66 294 IPR044523 -
Lele21g1915 295 SUPERFAMILY RING/U-box 231 295 - -
Lele21g1915 295 CDD RING-H2_PA-TM-RING 249 292 - -
Lele21g1915 295 ProSiteProfiles Zinc finger RING-type profile. 250 292 IPR001841 -
Lele21g1915 295 Pfam Ring finger domain 250 292 IPR001841 -
Lele21g1915 295 SMART ring_2 250 291 IPR001841 -
Lele21g1915 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 295 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1915 Lele-ChrLele21 26357430 26361123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1915 57 295 C3H Transcription Factor Family AT1G74410 49.583 1.52e-67 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1915 21 26357430 26361123 Lele21g1915 21 26357430 26361123 ECH
Lele21g1915 21 26357430 26361123 Lele23g0099 23 652230 656061 hybridization
Lele21g1915 21 26357430 26361123 Lele24g1829 24 23272770 23274710 hybridization