Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1885 ATGGAGAGGGGGACCGAATTTGTGTTGTATCGGAAGAACTGTGTAAAGGCATCCCTTGCTTTTGTTACTACTTTTATGGGATCAGAAGCTCCCGCTCTGGCAGCTGAGGAAGTCAATATGTTAGAAGGAACATCAAAAACCAGTTCTTGTCCTGGTAAAAAGAGCCAGGGGAAAATCCCCAAAAGAATTCACAAGGCTGAAAGGGAGAAAATGAAACGTGAGCATTTGAATGATCTCTTTCTTGATCTTGCCAATGCTATTGAACTCGGTCAGCAGCAAAACAATGGAAAGGCGACCATATTGTGTGAAGCCACTAAGCTGCTAAAGGACCTGCTTGGTCAGATTGAGACCCTTAAGAAGGAGAATGTGTCTCTGCTTTCTGAATCACATTATGTCACCATGGAGAAGAATGAGCTGAAGGAGGAAACTTCTGTTCTAGAAACACAAATCGAGAAACTTCAAGGGGAGATAGAAGCACGAGTAGCACAATCTAAACCCGACCTAAATGCACCTCCTCCAATGGAACTTGAGCCACCAGAGCAAACAATAATTGTTCCCAGAGAGTGTCTACAATTGCCTTCTGTTGATCCTACATTGCAACAAGGACCTGCTGTATTAGTTGTCCCCTTTCGTCCTCACCTTCAACCTTCTTTTCCCACCCCAAACATCGCCGAGCTCACCTCAAACTCCGTCGTGAGTAAACCTCATGCCAGGTATCCCACCCCTGCAGACTCATGGCCATCGCAGCTGCTTGGAGGGCAGCCAACATCAAGCTAA 777 0.4595 MERGTEFVLYRKNCVKASLAFVTTFMGSEAPALAAEEVNMLEGTSKTSSCPGKKSQGKIPKRIHKAEREKMKREHLNDLFLDLANAIELGQQQNNGKATILCEATKLLKDLLGQIETLKKENVSLLSESHYVTMEKNELKEETSVLETQIEKLQGEIEARVAQSKPDLNAPPPMELEPPEQTIIVPRECLQLPSVDPTLQQGPAVLVVPFRPHLQPSFPTPNIAELTSNSVVSKPHARYPTPADSWPSQLLGGQPTSS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1885 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 139 IPR036638 GO:0046983
Lele21g1885 258 Coils Coil 108 128 - -
Lele21g1885 258 MobiDBLite consensus disorder prediction 233 258 - -
Lele21g1885 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 111 IPR011598 GO:0046983
Lele21g1885 258 PANTHER TRANSCRIPTION FACTOR BHLH47 26 257 - -
Lele21g1885 258 Coils Coil 136 156 - -
Lele21g1885 258 CDD bHLH_AtILR3_like 65 140 - -
Lele21g1885 258 Pfam Helix-loop-helix DNA-binding domain 61 111 IPR011598 GO:0046983
Lele21g1885 258 Gene3D - 53 128 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1885 Lele-ChrLele21 26182152 26184409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1885 26 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 50.000 2.43e-66 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1885 21 26182152 26184409 Lele22g1853 22 23485829 23492380 ECH
Lele21g1885 21 26182152 26184409 Lele21g1885 21 26182152 26184409 ECH
Lele21g1885 21 26182152 26184409 Lele23g0130 23 841601 844194 hybridization
Lele21g1885 21 26182152 26184409 Lele24g1803 24 23097605 23105828 hybridization