Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1874 ATGAATCACGCAATTTTATGCGACAACCTAAAAAAGGTGTATCCATCGAGGGATGGAAACACAGAGAAATATGCAGTGAGAGGTTTATCTCTTGCTTTGCCTCAGGGGGAATGCTTTGGTATGCTTGGCCCCAATGGTGCTGGGAAGACCTCATTTATCAATATGATGATTGGTCTCACAAAGCCAACCACTGGGGCAGCATTTGTTCATGGTCTGGACATAAGAACTCAAATGGGTGAAATATATACTAGCATGGGCGTATGTCCACAGCATGACTTGCTGTGGGAAAGTCTAACTGGAAGAGAACACTTGCTCTTCTATGGAAGACTTAAAAATCTTAAAGGCTCGGCTTTAACACAAGCAGTGGAAGAATCTCTGAAAAGTGTAAACCTTTTCCATGGAGGAGTTGCTGATAAAAAAGCAGGAAAGTACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCCAAAGTTGTTTATATGGATGAACCAAGTACTGGTTTAGACCCTGCATCAAGAAACAATTTATGGAATGTTGTCAAGCGTGCAAAGCAGAATCGGGCAATCATACTAACCAGTATATTCCTTCTCCCTATCCTCCTTGTAACACAGATGACTGTAATAGCTCATTCCATGGAAGAAGCAGAGGTCTTATGTGACTGA 681 0.42 MNHAILCDNLKKVYPSRDGNTEKYAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTTGAAFVHGLDIRTQMGEIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQNRAIILTSIFLLPILLVTQMTVIAHSMEEAEVLCD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1874 226 Pfam ABC transporter 27 171 IPR003439 GO:0005524
Lele21g1874 226 ProSitePatterns ABC transporters family signature. 144 158 IPR017871 GO:0005524|GO:0016887
Lele21g1874 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 214 IPR027417 -
Lele21g1874 226 SMART AAA_5 35 219 IPR003593 -
Lele21g1874 226 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 225 IPR003439 GO:0005524
Lele21g1874 226 CDD ABC_subfamily_A 9 226 - -
Lele21g1874 226 Gene3D - 1 226 IPR027417 -
Lele21g1874 226 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 3 226 IPR026082 GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1874 Lele-ChrLele21 26131972 26133458 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1874 14 199 Calmodulin-binding Proteins AT2G36910 25.258 1.90e-12 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1874 21 26131972 26133458 Lele21g1874 21 26131972 26133458 ECH
Lele21g1874 21 26131972 26133458 Lele23g0140 23 893591 901387 hybridization