Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1859 ATGGAAGGAATCCATGCATCATTAAGGATAGTGTTGATATTATGTGCAGTAGTAATAGGGAGGGTGAGAGGAGAGTACGATGATGAAGTGTGGCGAAGACGATCCGAGGAAGCCAAGAGGGCAGCTCGAGAAGCTTACCACCCTGATCCTCTTCAAGTCACTGCAGATTTCAATCACCAAGTTCACTTGGCTATGGAACGTATCAGCAACACCACAAGAAGGGACTTGTTGGCTGGGCGGCAGCAAAAGCACAAACATGCATGCATGGCCACTAACCCCACCGATCAATGCTGGCGCTGCGACCCAAACTGGGCAAACAACCGCAAGAAGCTCGCCAACTGTGCCATCGGCTTCGGACGTGGCACCACCGGCGGCAAAGCCGGCGAAATGTACGTCGTCACCGACCCTTCCGATGACAACCTCCTCAAACCCAAACCAGGGACCTTACGATACGCCGTGATCCAACCGAGGCCGCTTTGGATCATCTTCGCGCGCAGTATGTTCATAACTCTGACGCAAGAGCTGATGATGACCAGCGACAAGACCATAGACGGGCGTGGAGCCAACGTGATGCTATTTGGGGCGAGTGATACGTTGGAGGCAGGAGACAGATTAATGCAAATGACGGTCGCGTTCAACCATTTTGGGGAAGGATTGGTGCAGAGAATGCCGAGGTGCCGATGGGGTTTCTTTCATGTGGTGAACAATGATTACACGCATTGGCACATGTACGCCATTGGAGGCAGCTCCGCTCCCACCATCATCAGCCAAGGGAACCGATTCGTTGCTCCTGCTGATCGTGCCAGCAAAGAGGTGACGAAGAGGGATTATGCGCCCCGAAATGTGTGGAAGAATTGGAATTGGATATCGGAGGGGGATTTGTTAATGAATGGCGCCTTCTTCATCGAGTCTGGAAAACCCACGCCACTTCCTCGCAATCACATCCAAGCAAAACCAGGCACTATGGCCGCCAAACTTACTCGCTCTGCTGGCGCTCTCAAATGTGTCAAAACTGATCAAAATGCTTTAATCCTGAATCCGTGCTACTTGGGGAAGTTGTGTGGGGTAGGATCCACTATAATCAGCTGA 1089 0.5188 MEGIHASLRIVLILCAVVIGRVRGEYDDEVWRRRSEEAKRAAREAYHPDPLQVTADFNHQVHLAMERISNTTRRDLLAGRQQKHKHACMATNPTDQCWRCDPNWANNRKKLANCAIGFGRGTTGGKAGEMYVVTDPSDDNLLKPKPGTLRYAVIQPRPLWIIFARSMFITLTQELMMTSDKTIDGRGANVMLFGASDTLEAGDRLMQMTVAFNHFGEGLVQRMPRCRWGFFHVVNNDYTHWHMYAIGGSSAPTIISQGNRFVAPADRASKEVTKRDYAPRNVWKNWNWISEGDLLMNGAFFIESGKPTPLPRNHIQAKPGTMAAKLTRSAGALKCVKTDQNALILNPCYLGKLCGVGSTIIS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1859 362 SMART amb_all 101 267 IPR002022 -
Lele21g1859 362 Pfam Pectate lyase, N terminus 28 76 IPR007524 GO:0030570
Lele21g1859 362 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lele21g1859 362 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lele21g1859 362 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lele21g1859 362 Pfam Pectate lyase 181 261 IPR002022 -
Lele21g1859 362 PANTHER PECTATE LYASE 18-RELATED 190 338 IPR045032 GO:0030570
Lele21g1859 362 SUPERFAMILY Pectin lyase-like 112 336 IPR011050 -
Lele21g1859 362 Gene3D - 190 334 IPR012334 -
Lele21g1859 362 Gene3D - 91 189 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1859 Lele-ChrLele21 26036855 26039169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1859 190 335 Polysaccharide Lyase AT1G14420 60.645 4.44e-58 193