Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1854 ATGACCGGTGGGAGGGTCCCCATGGGTTCTCTTACTAATGCTTCCAATTTGGGCCTTTTGCTTCAAAATCAAGCCGCTCCTTCCTCTTCTGACTCTCTCGATGCCTTTTTCCTTTCTGGTTCTTCCTCTTCTTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTAAACGAGGGAAAGGAGGTAACCTGTCATTCTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGACTTGGATGAATATTTTCATCAACCTGAGAAGAAGCGGCGGCTGACCGCTAATCAAGTCCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAGCCTCGGCAAGTTGCCATCTGGTTCCAGAATCGCCGCGCGCGATGGAAGACAAAACGGCTGGAGAAGGACTTTGATTCTCTGCAGGCTAGCTACGACAGTCTTAAAGCTGACTATGATAACATTCTCAAGGAGAAAGATAAATTAAAGGCTGAGGTTTCAAATCTCACAGAAAAGGTGCTCCTTAGAGAGAAACAAGAGGGAAACTACAAGCAGGATGACACGATGAGCAAACTTACAGAACCACAACAAGGGCAAAAGCCCTTGCTTGAGACTACTTCCGATGGTGAAGGCTCCAAGGTCTCTGTTGGGGCATGCAAACAGGAAGACATATGTTCAGCAAAGAGTGACATATTTGATGCAGATAGCCCACATTACACTGACGGAGTTCACTCTGCGCTGCTGGAGCCTGGGGATTCCTCTTATGTATTTGAACCCGATCAGTCAGATTTATCTCAGGATGAAGAAGACAACTTGAGCAAGAACTTGTTTCCTCAATACATATTTCCAAAGCTTGAAGACGTTGACTACTCCGACCCCTCTGAAAGTTCATGCAGTTTTGAATTCCCAGCTGAAGATCATGATGCCTTTTGGTCCTGGTCTTACTAG 987 0.4549 MTGGRVPMGSLTNASNLGLLLQNQAAPSSSDSLDAFFLSGSSSSFLGSRSMVSFEDVKRGKGGNLSFFSPFDHDENGDEDLDEYFHQPEKKRRLTANQVQFLEKSFEVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARWKTKRLEKDFDSLQASYDSLKADYDNILKEKDKLKAEVSNLTEKVLLREKQEGNYKQDDTMSKLTEPQQGQKPLLETTSDGEGSKVSVGACKQEDICSAKSDIFDADSPHYTDGVHSALLEPGDSSYVFEPDQSDLSQDEEDNLSKNLFPQYIFPKLEDVDYSDPSESSCSFEFPAEDHDAFWSWSY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1854 328 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Lele21g1854 328 MobiDBLite consensus disorder prediction 201 225 - -
Lele21g1854 328 Gene3D - 70 140 - -
Lele21g1854 328 SMART HOX_1 88 149 IPR001356 GO:0003677
Lele21g1854 328 Coils Coil 144 192 - -
Lele21g1854 328 MobiDBLite consensus disorder prediction 263 284 - -
Lele21g1854 328 MobiDBLite consensus disorder prediction 191 227 - -
Lele21g1854 328 SUPERFAMILY Homeodomain-like 74 146 IPR009057 -
Lele21g1854 328 FunFam homeobox-leucine zipper protein ATHB-6-like 93 139 - -
Lele21g1854 328 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lele21g1854 328 CDD homeodomain 90 146 IPR001356 GO:0003677
Lele21g1854 328 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Lele21g1854 328 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Lele21g1854 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 225 IPR045224 GO:0003700
Lele21g1854 328 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Lele21g1854 328 Gene3D - 141 191 - -
Lele21g1854 328 Pfam Homeodomain 90 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1854 Lele-ChrLele21 26014847 26016447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1854 27 326 Homeobox Transcription Factor Family AT3G01470 38.511 6.33e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele21g1854 Homeodomain 2.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1854 21 26014847 26016447 Lele22g1829 22 23327173 23328763 ECH
Lele21g1854 21 26014847 26016447 Lele21g1854 21 26014847 26016447 ECH
Lele21g1854 21 26014847 26016447 Lele23g0156 23 988049 989611 hybridization
Lele21g1854 21 26014847 26016447 Lele24g1784 24 22974362 22975960 hybridization