Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1843 ATGTTTGACACTTGTAGGACATTTTCTACTTCCCCCTCTTTGATTTATATTTCACTAGGGTTCAAGTCATTGGGTGGTATGGAACTGCAAAATGCATCCCCTGCCTTGGTTTTACAAGGGTCACAGAAAAATCAAGGCTCAGCAACTATGGCAACTGGTGAAGAGTCAAAACCAAAGAAGAAAATCTGCTGTGCTTGCCCAGACACTAAAAGGCTGCGAGATGAATGCATAGTAGAGCATGGTGAATCAGCTTGTGCAAAATGGATTGAGGCTCACCGTTTATGCCTGCGTGCTGAAGGTCTCAAATTTGTTTGGTACCCCCAGTCAATTCTGCATCCTTATGTTCATGAACAGTTAAGGTTTGAAGCTATGAAGGTTGTTCTGTATTTCAGCTTCTTGATCTTTTGCTTCCTTCTGCTTTTGGATTGTTCCGTTTCACTTCCTCTATGTATTGATTCCAGAGCACCCTTTACTCTCAACACGACACTGAGCTTTTGTCCGTATAATGGAACCACGTGCTGCAATTCCACACAAGATTCACAACTATCAAAGCAATTCCAAGTGATGAATATATCTAATTCTGGCTGTGCTTCCGTTTTGAAATCAATACTTTGTGCGAGGTGTGACCCGTTTTCAGCTGAGCTATTTACGGTTCCATCCTCTCCCAGATCAGTTCCTGTCCTTTGCAATTCTACCATTTCGACGAATACTACTCAGTCAAAGGCGGCAGTAGAGGACTACTGCTCCCTAGTTTGGGATACATGCCAGAATGTGTCCATAGCAAATTCTCCATTTTCTCCGACTTTGCAAGGTCAGACAGGAGGATCTACGGTAAGTACTGAAGCTGCCAAGCTCACTGAACTTTGGCAGTCCAAAACTGATTTCTGCAAAGCATTTGGTGGAGTTTCGAGTGATGAAGCAGTATGTTTTGATGGTGAACCCGTTGAACTAAATAAAACCAAGACTCCCAATGGCTCTCCAGATGGCTTGTGTCTTGAGAAAATCGGCAATGGATCTTATCTCAACATGGTTGCTCATCCTGATGGTTCTAATCGCGCTTTCTTCTCTAACCAAATGGGTAAAGTATGGTTGGCAACGCTACCAGCTGAGGGTTCAGGAGGGACAATGAAGCTTGATGAATCTAGCCCCTTTGTTGATCTAACCGAGCGAGTCTATTTTGATTCGGCATTTGGAATGATGGGCATGGCATTTCATCCAGACTTTGCAAAAAATGGTCGATTTTTTGCGTCATATAATTGTGATAAGTCCAAGTCACCACAATGTGCAGGAAGATGTTCATGTAACTCAGATGTTAATTGTGATCCATCAAAGCTAGGTACTGAAAATGGTGCTCAACCATGCCAGTATCATACTGTTATAGCAGAATATACCGTTAATGGTACTGCGACCCAGCCTTCCATGGCAGAAAGTGCTAAACCCATAGAGGTGAGAAGGATATTCACAATGGGTCTCCCATTTACTTCTCAACATGGAGGTCAGATACTCTTTGGACCTGATGATGGGTATTTATACTTCATGACGGGATATGGAGGTGGCAGTGGTGATCCATATAATTTTGCCCAGAACAAGAAATCATTGCTTGGAAAGATCATGAGACTTGATATTGACAACATTCCAAGTGCAGAAGAAATTGCCAAACTTGGTCTTTGGGGTAACTACTCTATTCCTAAGGATAATCCATTTACTGAAGATGCAGATCTCCAGCCTGAAATCTGGGCATTGGGACTTAGAAATCCTTGGCGCTGTAGTTTTGATTCAGAAAGACCTTCCTACTTTGTGTGTGCGGATGTTGGCCAGGATCTTTATGAGGAGGTGGATCTCATTACAAAAGGAGGGAACTATGGGTGGCGTGTTTATGAGGGCCCTTACAAATTCACCCCTAAAGATTCACCTGGAGGCAACACTTCTTTGAACTCTATAAATCCAATATTCCCAATAGCAGGTTACAACCATTCCGAAGTAAACAAGAATGAAGGATCAGCCTCCATTACTGGGGGCTATTTCTATAGGTCTATGACTGATCCTTGCATGTATGGAAGGTACTTGTATGGAGATCTGTATGCAGTTGCTATGTGGTCAAGCATTGAGGATCCAGAAAATAGTGGAAACTTCACTACAAACAAAATCCCTTTCAGTTGTGCACGTGATTCTCCTATCAAATGTGACTCTATACCTGGAAGCTCCCAGGCATCTATAGGTTACATCTTCTCATTTGGGGAAGACAACAATAAGGATGTTTATGTGCTTGCAAGCTCCGGTGTTTACCGTGTCATTCGTCCAAGTCGGTGCGGTTACACTTGCTCGAAGGAAACTGCGGCCCCAACAGGTTCTAGCCCAGCTCCTTCTCCACCTAATGCTAGCCGTGGGAGTATCCTCTCTGACAATCTGTTTCTGCAGCTTTCATATTTCCTGTTGTATCTCACGTGTTATTGTCTTCTGAACATTATTTAA 2472 0.4308 MFDTCRTFSTSPSLIYISLGFKSLGGMELQNASPALVLQGSQKNQGSATMATGEESKPKKKICCACPDTKRLRDECIVEHGESACAKWIEAHRLCLRAEGLKFVWYPQSILHPYVHEQLRFEAMKVVLYFSFLIFCFLLLLDCSVSLPLCIDSRAPFTLNTTLSFCPYNGTTCCNSTQDSQLSKQFQVMNISNSGCASVLKSILCARCDPFSAELFTVPSSPRSVPVLCNSTISTNTTQSKAAVEDYCSLVWDTCQNVSIANSPFSPTLQGQTGGSTVSTEAAKLTELWQSKTDFCKAFGGVSSDEAVCFDGEPVELNKTKTPNGSPDGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQMGKVWLATLPAEGSGGTMKLDESSPFVDLTERVYFDSAFGMMGMAFHPDFAKNGRFFASYNCDKSKSPQCAGRCSCNSDVNCDPSKLGTENGAQPCQYHTVIAEYTVNGTATQPSMAESAKPIEVRRIFTMGLPFTSQHGGQILFGPDDGYLYFMTGYGGGSGDPYNFAQNKKSLLGKIMRLDIDNIPSAEEIAKLGLWGNYSIPKDNPFTEDADLQPEIWALGLRNPWRCSFDSERPSYFVCADVGQDLYEEVDLITKGGNYGWRVYEGPYKFTPKDSPGGNTSLNSINPIFPIAGYNHSEVNKNEGSASITGGYFYRSMTDPCMYGRYLYGDLYAVAMWSSIEDPENSGNFTTNKIPFSCARDSPIKCDSIPGSSQASIGYIFSFGEDNNKDVYVLASSGVYRVIRPSRCGYTCSKETAAPTGSSPAPSPPNASRGSILSDNLFLQLSYFLLYLTCYCLLNII 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1843 823 Pfam Glucose / Sorbosone dehydrogenase 352 634 IPR012938 -
Lele21g1843 823 PANTHER HEDGEHOG-INTERACTING PROTEIN 178 781 - -
Lele21g1843 823 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 338 676 IPR011041 -
Lele21g1843 823 FunFam HHIP-like 1 334 759 - -
Lele21g1843 823 SUPERFAMILY Cysteine alpha-hairpin motif 51 103 IPR009069 -
Lele21g1843 823 Gene3D - 336 735 IPR011042 -
Lele21g1843 823 Pfam Folate receptor family 167 301 IPR018143 -
Lele21g1843 823 FunFam Cytochrome c oxidase copper chaperone 38 103 - -
Lele21g1843 823 Pfam Cytochrome C oxidase copper chaperone (COX17) 59 101 IPR007745 GO:0005507|GO:0005758|GO:0016531
Lele21g1843 823 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 63 103 - -
Lele21g1843 823 Gene3D CytochromE C oxidase copper chaperone 40 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1843 Lele-ChrLele21 25937817 25943704 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1004 17 20811792 20815073 Lele21g1843 21 25937817 25943704 CCT
Lele18g0531 18 3131485 3136356 Lele21g1843 21 25937817 25943704 CCT
Lele19g0555 19 3199480 3201549 Lele21g1843 21 25937817 25943704 CCT
Lele21g1843 21 25937817 25943704 Lele22g1817 22 23249165 23252335 ECH
Lele21g1843 21 25937817 25943704 Lele21g1843 21 25937817 25943704 ECH
Lele21g1843 21 25937817 25943704 Lele23g0169 23 1069444 1072858 hybridization
Lele21g1843 21 25937817 25943704 Lele24g1772 24 22896136 22901242 hybridization