Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1842 ATGTCCGAAGGATCTCCTCCTCCTCCTCCTGTTTCTAACGAACCCTCTAATCGATCCTGGCCTGAACCCAATTCTCAAGGCCATATATCTGATTCCCCCAACGACGTCGTTCCCACTTCTAAGGAGGAAACCGCCGCCGCTCCCACCACTACCAGGAGCAACCGCCCGTCTCGCGCCTGCACCATTCGAGCTGCTTCTCGTCTCCATTCAACAACGCAGCCGGCGAACGGCGGCCGGCAACGCAAAGGTTCGAAGAAGGAGCAGCAGCTGCCGGAGGACTCGCCGGAGCAACAGCAGCAATGTAGCAGGATTGTGACACCGCTTGTAGAGCCACCATCACCTTCGCAGGTGCCTCGGTGGAACCTGAGGTCGATGTGGGAGTTAGCTTCCATACTCAATTTCTTGCATGTATTTAGGCCCCTTTTGAATATCTCAGCAGAGTTCTCGGCCGAAGAGTTTGAGACAGCTCTGCTTACCCCCAATGATACTTTGAGTGATATACATATGCCCTTGCTAAAGGCAATCCCTCCCATTACACGAATGGCCCTCACACGTGATACCTGGATAACCGTATTATGCAGAAAATTGAGAGATTGGTGGCATTGGGTTGCAAATGGGGAACTTCCTATTGTTGCTTCACATGGGCTAGAAATTGAGGCATACAAATCACTTGATCCTGGGATTCGTTTGGTCATCTTAAAGGCACTATGCGACATTCGTGTTGAGCAAGAAGATATTCGAAGTTATATTGACAGCTCACTCAAACATGGGGTTCAACTTTCATCATTTCGTAAAGAGCTTATTGGGGGTGATTCACATGGAATTTTATATTGGTATGAAGATGACCCCATAATTGGCCATAGGTTGTATCGGGAAGTAAGGAAAACTGAAGTGATTCAAATGAGGAAAGGGAAACCAAAAGGTTCCCGGGTCAATTCTAGTACAGCATATCAGTGGGAAGCAGTTGCTACTAATTTGGATGAATTTGTAGATGTTGCCGAAAAGCTTTTCTCAAGCAAAAACAAAACGGAGGTGTCACTAGGGAAAAAGTTGAAGATAGACATGCTTCCTGAGATTGAGAAGGTTCATAAGAAAAAAGAGCGGTTGCTGAAAAAGCAACAAAGAGAAGCTCTTCTTCTTGATAATTTCTTGGTTGGTGATGGGTTTGGTCCTGGGCGCTCACTTCGTGGTAGGAAACCTGTTACCTACACATTTGATGATTATGATCGGTCCATCAATGAGGCAATTAAGATGACAAAACGAAAACAACTATCCCCAGAGCCTATAACCAGGAGAGAAGAAGGAGAAAAACCTGAAGCTTTGACTAACGGTAAATCGAGTGGGCCTTCATATGCCTCTCAACATCTGAGCTTTGGTATGCCATCTCCAAATTCATCTGATTTTGACGATGCTGAGGAAGAACTTAAATCTGAACCATTGGATCGAAGCAATCGGCGAAGACAAAGACCTGTGCGGTATTCAGAGAAAGAGTTTGTTGAAGCGGTTTCAGATAATGAGACAGACTTTGATAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGACGAATATCTCAGGCAACGTTTTGAAGATGGTCCAAACTCGATAATGAAAGACGAAAACGATCATTACTGA 1638 0.4542 MSEGSPPPPPVSNEPSNRSWPEPNSQGHISDSPNDVVPTSKEETAAAPTTTRSNRPSRACTIRAASRLHSTTQPANGGRQRKGSKKEQQLPEDSPEQQQQCSRIVTPLVEPPSPSQVPRWNLRSMWELASILNFLHVFRPLLNISAEFSAEEFETALLTPNDTLSDIHMPLLKAIPPITRMALTRDTWITVLCRKLRDWWHWVANGELPIVASHGLEIEAYKSLDPGIRLVILKALCDIRVEQEDIRSYIDSSLKHGVQLSSFRKELIGGDSHGILYWYEDDPIIGHRLYREVRKTEVIQMRKGKPKGSRVNSSTAYQWEAVATNLDEFVDVAEKLFSSKNKTEVSLGKKLKIDMLPEIEKVHKKKERLLKKQQREALLLDNFLVGDGFGPGRSLRGRKPVTYTFDDYDRSINEAIKMTKRKQLSPEPITRREEGEKPEALTNGKSSGPSYASQHLSFGMPSPNSSDFDDAEEELKSEPLDRSNRRRQRPVRYSEKEFVEAVSDNETDFDSDDDIVGEAVYDDEYLRQRFEDGPNSIMKDENDHY 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1842 545 Coils Coil 356 376 - -
Lele21g1842 545 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 220 251 IPR028942 -
Lele21g1842 545 PANTHER REMODELING AND SPACING FACTOR 1 51 529 IPR028938 GO:0006355|GO:0031213
Lele21g1842 545 MobiDBLite consensus disorder prediction 417 440 - -
Lele21g1842 545 MobiDBLite consensus disorder prediction 475 495 - -
Lele21g1842 545 MobiDBLite consensus disorder prediction 443 464 - -
Lele21g1842 545 Pfam DDT domain 130 175 IPR018501 -
Lele21g1842 545 MobiDBLite consensus disorder prediction 1 16 - -
Lele21g1842 545 MobiDBLite consensus disorder prediction 417 495 - -
Lele21g1842 545 MobiDBLite consensus disorder prediction 1 116 - -
Lele21g1842 545 MobiDBLite consensus disorder prediction 17 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1842 Lele-ChrLele21 25929226 25934604 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele21g1842 DDT 1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1005 17 20815592 20817077 Lele21g1842 21 25929226 25934604 CCT
Lele19g0554 19 3195793 3197279 Lele21g1842 21 25929226 25934604 CCT
Lele21g1842 21 25929226 25934604 Lele21g1842 21 25929226 25934604 ECH
Lele21g1842 21 25929226 25934604 Lele24g1771 24 22886616 22892017 hybridization