Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1818 ATGGGTGGTGGCAATGGCAAGCGCAGGTGGAGAATTTCCTTCCATCGTTCTTCTTCTTCTTCTACTACTTCCGCTGATTCCAAGCTCGAACCAGAGGATCCCCCGAAGGAGTTTCTATGTCCAATTTCCGGGACTTTCATGTCCGACCCCGTTGTTGTTTCTTCGGGTCACACATTCGAACGTGTTGCCGTTCAAGTTTGCAGAGATTTAAACTTCTCCCCCAGCCTCGAAGATGGGTCTCGACCCGATTTCTCCACGGTCATTCCCAATTTGGCCATCAGAAGTACCATCTCTAATTGGTGCAAAAACTCCGGCATGGAACTCCCTCGCGCGCCTGAATATAGCTCTGTCGAGAGGGTAGTACTCGTATCAATGGCATGCCTGCAGGACTCGCCAGATTTAAGGGTTTCGGAGAGGGAATTGCTGAAGGCGGTTGCGAACAACCCGCCGGTGAATATCTCCCACGCCGTCACCGAGTTGGGTCCTCGAGTTAACCACTTCGATTCGTGCTCGTCGGAGGAATCCGTCATCATCGTGCCCAGTCCCGGCACGCCACTGCATCTAACCACTCGTCCCACCTGTTACTCTCCATCGTCTTCTTCTTCCGTAACCATTGAATCGGAATTTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGACAAATTAGTCTCGAAGCTGAAAAGCAATGAGATTTTCGAGCAAGAAGAAGCTGTTATATCACTGAGAAGCATCACGAAGAACAGAGAGAGCACCCGAATTTCTCTCTGCACCCCCCGATTGCTTGACGCCCTACGATCTTTGATCGCCTCCAGGTACTCCGTCGTTCAAGTGAACGCCGTCGCTTCCCTGGTCAATCTCTCCCTCGAGAAATCCAATAAGGTGAAGATCGTTCGGCAGGGATTCGTCCCGTATCTCATCGACGTGTTGAAGAGTGGATCGGATGAATCGCAAGAACACGCGGCCGGCGCCCTCTTCAGCCTAGCTATAGACGATGACAACAAAATGGCCATCGGAGTTCTCGGCGCGTTTCAGCCACTCATGCATGAGCTAAGATCCGAGTCGGAGCGTACCCGAAACGACTCGGCGCTCGCGTTGTACCACCTGACCTTGGTACAAAGCAACCGGGTCAAGCTGGTGAGACTCGGGGCAATCCCGACCCTACTCGCGATGTTGAAAGCAGGTAAATTGACGAGCCGAGTGTTGCTAATTCTGTGTAATCTAGCTGTGTGTACGGAGGGACAATCAGCTATGCTGGACGGCAATGCAGTAGAGTGCTTAGTGAGTTTATTGAAGGGGAAAGAGTTGGACTCCGAGTCGACTCGTGAGAACTGTGTTGCTGCGTTGTATGCTCTTAGCCATGGAAGCCTGAGGTTCAGAGCAGTGGCGAAGGAGGCAAAGGTTATGGAGGTGTTGAACGAGATTGAAGAGAGAGGTACGGAGAGAGCCAGAGTGAAAGCGAGGAGGATAGTGCAGATGATGCGGGCGGGAGGAGAAGACGAAGATGGGAACGGGTCGAACTTTGGTTTGGACTCGGGCGGGCTGAACCGGAATCGGTTCAGAGGGAGGAATATCAACATTGCGAACTCAACTGCATTTTAG 1602 0.52 MGGGNGKRRWRISFHRSSSSSTTSADSKLEPEDPPKEFLCPISGTFMSDPVVVSSGHTFERVAVQVCRDLNFSPSLEDGSRPDFSTVIPNLAIRSTISNWCKNSGMELPRAPEYSSVERVVLVSMACLQDSPDLRVSERELLKAVANNPPVNISHAVTELGPRVNHFDSCSSEESVIIVPSPGTPLHLTTRPTCYSPSSSSSVTIESEFQNPNGPISEEEDKLVSKLKSNEIFEQEEAVISLRSITKNRESTRISLCTPRLLDALRSLIASRYSVVQVNAVASLVNLSLEKSNKVKIVRQGFVPYLIDVLKSGSDESQEHAAGALFSLAIDDDNKMAIGVLGAFQPLMHELRSESERTRNDSALALYHLTLVQSNRVKLVRLGAIPTLLAMLKAGKLTSRVLLILCNLAVCTEGQSAMLDGNAVECLVSLLKGKELDSESTRENCVAALYALSHGSLRFRAVAKEAKVMEVLNEIEERGTERARVKARRIVQMMRAGGEDEDGNGSNFGLDSGGLNRNRFRGRNINIANSTAF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1818 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 338 IPR000225 GO:0005515
Lele21g1818 533 SMART arm_5 290 330 IPR000225 GO:0005515
Lele21g1818 533 SMART arm_5 411 454 IPR000225 GO:0005515
Lele21g1818 533 SMART arm_5 372 410 IPR000225 GO:0005515
Lele21g1818 533 SMART arm_5 331 371 IPR000225 GO:0005515
Lele21g1818 533 SMART Ubox_2 37 100 IPR003613 GO:0004842|GO:0016567
Lele21g1818 533 ProSiteProfiles U-box domain profile. 33 107 IPR003613 GO:0004842|GO:0016567
Lele21g1818 533 SUPERFAMILY RING/U-box 22 109 - -
Lele21g1818 533 Gene3D - 217 495 IPR011989 -
Lele21g1818 533 PANTHER U BOX DOMAIN-CONTAINING 26 495 - -
Lele21g1818 533 SUPERFAMILY ARM repeat 222 485 IPR016024 -
Lele21g1818 533 FunFam RING-type E3 ubiquitin transferase 218 494 - -
Lele21g1818 533 Pfam U-box domain 35 103 IPR003613 GO:0004842|GO:0016567
Lele21g1818 533 MobiDBLite consensus disorder prediction 1 34 - -
Lele21g1818 533 FunFam RING-type E3 ubiquitin transferase 15 108 - -
Lele21g1818 533 Pfam Armadillo/beta-catenin-like repeat 293 329 IPR000225 GO:0005515
Lele21g1818 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Lele21g1818 533 CDD RING-Ubox 39 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1818 Lele-ChrLele21 25777366 25778967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1818 3 533 U-box Gene Family AT5G65200 55.814 0.0 553