Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1804 ATGCTCAGCGTTCCGCATAAGACTCAGCAAATAGGTGATAGCTTGAAGTACTCATACCCTGAATCGCTTTTCTCTTCATTCCAAGCTCCTTATTACATTTCTATAAATGAGAAAGAACAACCATCTCCTTCATCAACAGTAAGCAAAATCAGCCCACTTATTCTATTAGTGATAATTGTTCTAGCAGTCATCTTCTTCATCTATGGAATCGTTCATTTAGTTCTTTGGCTTCTAATGAAAACTCCATCATCCTCTTCAACTCTATCTCATTCCAATAGATTTCCAGAATCCACGCAGTCTCGTGCTTTTCAAAGGCAGCTTCATCATCTCTTTCGCTTACATGATTCAGGATTAGAACAGTCTCTCATAGATGCTCTTCCTGTTTTTTTCTACGTGGATGTCTTAGGTTTGAAAGAACCCTTTGATTGTGCTGTGTGCCTCTGTGAATTCTCGGAGCATGACAAGCTGAGATTGTTGCCAATGTGTGGCCATGCTTTTCACATCACTTGTCTAGACACGTGGCTTCTCTCAAACTGTACATGCCCTCTCTGCAGAGCGACAGTCTCATCAAGTTCCAATTTTTCCTTGGAAAATCCATTATTCAACAATGATAATTCATGGGTTTTGAACAGATTCAAAGGAGATGAAGAGAATGTCAATGGGTGTTCATCAGGTACTGAGAGAATTAACGAAAAAAGGGTTCTTTCTGTGAGGCTTGGGAAGTTCAGAAACATTGACGGAGGAGAATTAGAGGTTGGAGAAGAAGAGGGTAGTAGTTGTAATATGGATGGAAGGAGATGTTTCTCCATGGGTTCGTATCAGTATGTAGTGAGTGGTTCAAATCTGCAAGTGGTTCTTTCTGATGTTTCAGACAATGAGGATGATGCTGTGGAGGGGAAGAAGATAAGAGAAAGAGTTAGAGGTGAGAGCTTCTCTGTGTCAAAGATATGGCTTTGGTCCAACAAGAGTAAGTTTCGAAGTTCTTCTGATGATGCTGCTTTACCTTGGTTACTGTCATATCAGCTCTTCTTTTCCATGAGTCGACACAGGCTTCCTCGGTGTCCGAAATCGCGGGGCTTCGGCCGCGTCCAGTTCACTACCCTCGACGCCAAATTGAAAGCTCAATCACTTTATCTTCAAGATCGCCTTGTCTTCAAATCCCACCGCCTCAAAATCTCTGAGAGCTCAGAAGACATCATCTTCAGACCCGCCAATGCAAGAAACCGGGTCGACAATGGGGTTTTGCATGCGGGGTTTATGGTTAAAGAGAACTGATATATTGCAGACACATGGATATTGTTTTGGGGAAGGAAAAATGAACGCACTACTTCTGAAGACTTCTCACCCATGAAGTCAGTTGGACACTCTACTTCATTTTGCTGGGTCATTGAAGAAGAACCATTAGCTGCAGATATTTTTCAAAGTTTCCCACTCTACAGAGAAAATTTAAATGAACTAATTCTGGAAGATGGGGAAGAATTCTGTTCTACATCAGAAATAGTTCCACTTGTAAAGTGGGGTTCAGATTCGAAGGTACCATATGAGATTATTTTTCAACTCAATTCTCTTGTTCATACACAGAAAATAAGTTTTGCTTCTGTAGATGATGATTTGGTTGATTTGTTCAGCACCTTAAATGAAGAAACTTATGTGACTTCATTAGAGTTACTTTTGTTGAAGAGGATTGGAGTAAGCTTCCAACCGGTGCAGTCTCCACTAGCATTCAAAAGGGAATCTTTTCAAACTGAAATATATAAGCGGATATTGACTATTCTTCAATATGGGATTGTAATTGGGGCTAAGAGATTTCAGTTTCTGGCCTATTCAGCTAGTCAACTCAGGTCAAATTCTGTTTGGATGTTTGCTTCTAATGATAGTGTGACAGCAGATGATATTAGAGAATGGATGGGAAGGTTCAAAGTGATACCCAGTGTCTCTAAATGTGCAGCAAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTCTTGAAGTTCCAACACGGGATGTGGAGTTAATTCCAGATATTGAAATCACCTCTGATGATGGGATGATGGTACAAGCTATTGTTTCTCTGATGATGTTGCATCAAGGTTATGAACCAAACATTGAACCTTACTTATCAATGATGCTTGGGGCTTATTATGAGCACCAGTTATTGGATTTGAAAATTAGATGCCGAATATTTGTCCTTAAAGGGTGGATTTTAATTGGTTGCTTGGATGAAACTGGTCTTCTTAATTATGGCCAAGTATATGTCCGCATAACCATGACAAAATCTGAGCTTGAAAGTGGGGATGACAGCTTAAGGAAAGTGGATGGGAGCACATGTGTAATAGTGGGCAAGGGCCTAGGCAAATATAGAAGATTTTACATGGACTTGCTAGATGTTATCGTCATATTCCAAAAAGCCATTCCATTTCTGCTGTTTGTGTTTTATACTCTCTGCTTGGATTTAGAGCCGCATCCAAATGAATGCTCAGGTGGTGATCTTGATGGTGATTTATATTTCATAAACTGGGATAAAGGCCTCGTCCCATGCAAAACAGTGGCTCCAATGGGCTGCTCATGGAGGCCCCATGTGATAGATCACGAGCTGACACTGAAGGAAATCCAACAATTTTTTGTTGATTACATGATCAATGATACTTTAGGTGCTATCTCCACAGGTCATCTGGTTCATGCAGACCATGAACCTGAGAAAGCCATGGGTAGAAAATGTCTGGGGTTGTCAGAGCTTCACTCCATGGCTGTTGACTTTGCGAAGACCGGAATTCCTGCTGAAATGACAAGGACCTTGAAACCAAGGGAGTTTCCTGATTTCTTGGAGAGGGTAGAAGCATATGATCATGAACTTGAGATGGATGGTTTTGAGGACTTTCTTGAGGTTGCAAAATTTCATAGAGATATGTATGCTGAGAAAATGGGGTCTTTAATGAACTTCTATGGAGCTGAGACTGAGGATGAGTTTCTGACTGGTAACTCGCGAAGTCGTGCTTCATATTTGCAGCGTGATAACAGGAGATACAGAGATATGGAGGATCGGATTCTGTTATCGGTGAAGAATTTGCAGCATGAAGCCAAACATTGGTTCGAAAGTAGTTGCCAACCACATGAAAAGATGCAAATGCCCAGTGCTTGGTATCTTGTTACGTATCACCCTCCATATAACCAGGAGAGCTCTAGTTGTCTGAGTTTTCCATGGATCTTAGGGGACATTTTATTGCATATAAAGTCTAGAAAGGGAAAAAAACTGAGGGAAACTCCAGTTGAATAG 3276 0.41 MLSVPHKTQQIGDSLKYSYPESLFSSFQAPYYISINEKEQPSPSSTVSKISPLILLVIIVLAVIFFIYGIVHLVLWLLMKTPSSSSTLSHSNRFPESTQSRAFQRQLHHLFRLHDSGLEQSLIDALPVFFYVDVLGLKEPFDCAVCLCEFSEHDKLRLLPMCGHAFHITCLDTWLLSNCTCPLCRATVSSSSNFSLENPLFNNDNSWVLNRFKGDEENVNGCSSGTERINEKRVLSVRLGKFRNIDGGELEVGEEEGSSCNMDGRRCFSMGSYQYVVSGSNLQVVLSDVSDNEDDAVEGKKIRERVRGESFSVSKIWLWSNKSKFRSSSDDAALPWLLSYQLFFSMSRHRLPRCPKSRGFGRVQFTTLDAKLKAQSLYLQDRLVFKSHRLKISESSEDIIFRPANARNRVDNGVLHAGFMVKENXYIADTWILFWGRKNERTTSEDFSPMKSVGHSTSFCWVIEEEPLAADIFQSFPLYRENLNELILEDGEEFCSTSEIVPLVKWGSDSKVPYEIIFQLNSLVHTQKISFASVDDDLVDLFSTLNEETYVTSLELLLLKRIGVSFQPVQSPLAFKRESFQTEIYKRILTILQYGIVIGAKRFQFLAYSASQLRSNSVWMFASNDSVTADDIREWMGRFKVIPSVSKCAARMGQLFSSSMQTLEVPTRDVELIPDIEITSDDGMMVQAIVSLMMLHQGYEPNIEPYLSMMLGAYYEHQLLDLKIRCRIFVLKGWILIGCLDETGLLNYGQVYVRITMTKSELESGDDSLRKVDGSTCVIVGKGLGKYRRFYMDLLDVIVIFQKAIPFLLFVFYTLCLDLEPHPNECSGGDLDGDLYFINWDKGLVPCKTVAPMGCSWRPHVIDHELTLKEIQQFFVDYMINDTLGAISTGHLVHADHEPEKAMGRKCLGLSELHSMAVDFAKTGIPAEMTRTLKPREFPDFLERVEAYDHELEMDGFEDFLEVAKFHRDMYAEKMGSLMNFYGAETEDEFLTGNSRSRASYLQRDNRRYRDMEDRILLSVKNLQHEAKHWFESSCQPHEKMQMPSAWYLVTYHPPYNQESSSCLSFPWILGDILLHIKSRKGKKLRETPVE 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1804 1091 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Lele21g1804 1091 SUPERFAMILY RING/U-box 122 191 - -
Lele21g1804 1091 SMART ring_2 143 184 IPR001841 -
Lele21g1804 1091 Pfam RNA dependent RNA polymerase 579 679 IPR007855 GO:0003968
Lele21g1804 1091 Pfam RNA dependent RNA polymerase 693 945 IPR007855 GO:0003968
Lele21g1804 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 194 IPR013083 -
Lele21g1804 1091 CDD RING-H2_PA-TM-RING 142 185 - -
Lele21g1804 1091 PANTHER RNA-DEPENDENT RNA POLYMERASE 946 1088 IPR007855 GO:0003968
Lele21g1804 1091 Pfam Ring finger domain 142 185 IPR001841 -
Lele21g1804 1091 FunFam E3 ubiquitin-protein ligase ATL6 106 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1804 Lele-ChrLele21 25675431 25683321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1804 38 352 C3H Transcription Factor Family AT2G18650 41.598 2.58e-52 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1804 21 25675431 25683321 Lele23g0203 23 1341251 1349605 hybridization