Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1802 ATGCTTTGTTCATGTTTGTTTTTCCAGCAGGAAATTTATGTACAGCCATTGGAAATTCTTAGTCTTGCATCAGTTTTATTGCTTTCAGAAAAAAGGTGCGCTCTTTTATCTTTGTTCGGCTGTTTCGTGTTGTGGGTTGGTTCTGTTATATTTGCTTTAGGGGTGAAAATGGTGGCTACATCTTGCACAAATTTGTTGGACTTGGTGTCTGGGGACATTTTAAATTTCCCTCAAACACCCAGAGCTCTTCCGCGTGTTAATACTGTTCCTGGAGTAATTTCTGATATAGATGGGAAAAAAGGTACTGGTGATGATGATTCACAGGCTTCCTCATCAGAACATCGTCAAAAGATAATCATTGTAGCAAATTTTCTTCCCCTTAATGCTCATAAGGATAAAGATTCCGGCAGATGGTGCTTTAGTTATGATGAAGATTCGATTTTGTGGCAGCTAAAAGATGCTATTTCTTTTGATACCGATGTTGTTTATGTGGGATCGTTGAAGGTTGATGTTGATGAAAGTGAACAAGAGAGAGTTTCTCAAGAGTTGCTAGATGAATTCAAATGCTGGCCTACCTTCCTTCCACCGCTCATTCAGAATAGGTTTTATAATGGATTTTGCAAGCAACATTTGTGGCCACTATTTCACTACATGTTACCGATGTTTCCTGATCATGGCAATCGCTTTGATAGGGTGCTCTGGCAGGCTTATGTTGCTGCTAACAGGATATTTGCAAACAGGGTTTTGGAGGTTACGAATCCAGAAGTTGATTTTGTATGGGTTCATGATTATCATCTCATGGTTCTCCCAACATTTCTCAGGAAAGGATACAGTAAAGTGAAGCTAGGATTTTTCCTTCACAGCCCCTTTCCTTCGTCAGAAATTTATCGGTCTCTGCCTGTCAGAGATGAAATTTTGAAAGCACTTCTCAATGCAGATTTAATTGGCTTTCATACATTTGATTATGCTCGTCATTTTTTATCTTGTTGTAGTCGAATGCTTGGCTTGGAATATGAATCCAAAAGGGGCTACATTGGGCTTGAATACTATGGCCGCACAGTATACATTAAAATCTTGCCAGTAGGAATTCACATGGCTAGGCTTCAATCCGCTATAAATCACCCATCTTCTACTGACAAAGTTCAAGAACTTTATGAGCAATTTATGGGGAAGCAACTTATTCTTGGTGTTGATGATATGGACATCTTTAAAGGAGTCAGTTTGAAGCTCTTGGCTGTAGAATTACTCCTAGAGCAGAATCCAGAACTTCTTGGTGAATTAGTACTAGTCCAAATTGTAAATCCCCCGAAAAGTTCAGGCAAAGGTGTTGAGGAAGCAAAGGAGATACACCATATTGCTGACAGGATAAATGAAAGGTTCAGTTGGCTAAATTATGAACCTGTGATCATCATAGATCATCCAGTTTCTTTTTATGAGAAGATAGCCTATTATTCCTTGGCAGAATGTTGCATTGTGAATGCCGTGCGCGATGGTATGAATTTAATTCCATACGAGTATATCGTCTGTAGGCAGGGGAATACGCAAATGGATCAAGCCTTGGGAATTGTTTCAGAGCTCCCTCGTACAAGTCCACTTGTTGTTTCTGAGTTTATTGGTTGCTCGCCATCTCTTAGTGGGGCATTGAGGGTGAACCCATGGGACATAAGTGCTGTAGCTGATGCAATAAATTTGGCCATCAGTATGTCTATCGTGGAGAAACAGTTACGGCATGAGAAGCACTATCGGTATGTTAGCTCTCATGACATGGGTTACTGGGCTCGAAGTTTTGTACAAGATCTAGTTCGTTCGTGCCAGGATCACCTCAGCAAACGTTGTTGGGGCATTGGCTTTGGACTGAGTTTCAGAATCCTGGCCCTTTCTCCCAGTTTTAGGAAGCTGTCAATTGGCCACATTGTCTCCGCATATAAAAGGTCAAATCAGAGAGCAATTTTTCTGGACTATGATGGTACACTTGTGTCCCAAACTTCCATTGTTAAAAGTCCCAGTCCTGAAGTCATATCTTTGCTGAACAACCTATGCAGTGACCCCAACAACATTGTGTTTATAGTCAGTGGCAGGGGAAGGCTTTCATTAGGTGAGTGGTTAAATCAGTGCGAGAACCTGGGTATCGCAGCTGAGCATGGTTATTTTATCAGGTGGGATGTACAGTCAAGTTGGGAAACAAATTATATAGCTACAGATTTTGCTTGGAAAAGCATTGTTGAACCTGTAATGAGAGCATATACTGAGTCAACTGATGGCTCTCAAATGGAGATCAAGGAGAGCGCCTTGGTTTGGCACCACCGTGATGCTGATCTTGATTTCGGGTCTTGGCAGGCCAAGTCGCTGCTGGATCACCTTGAAAATGTCCTTTCAAATGACCCAGTGGTTGTTAAGAAGGGACAGTACATTGTTGAAGTTAAACCACAGGGAATCACGAAAGGCCTTGCTACTGCTTCAAGGCTTAAACCAGTATGTGATGATGAAGAAGAAGATCCTTCTGAAAGAGCGGAAGCTGGTTCTGTAACGCTATACCTTCAAGATCATTGGCCTTCGTTCAAGAGCATTGGCCTTCTTCGTCGTGCCATGACTCATGCTTCCTTCTCAGAAGAGAACAACAGAGCTCTGAGCATTCTGGGGGCCAATGTCATTGAAACAGCTGTCTCTTCCCATTCACTTTCAAAAGACATTGACATCTCTCCGAAAGATCTGAATCGTAGAATAGCGGAATTTTTCAACGTGGAATCTTCATGCACTGGAGACGCATTGCGGTTGGGTTTGCAAAAGGTGGTTCGGGTTCCACCCAAGACCAATTCTTCTGCACCTTCTGCGGTTTGTGGTGCATTCCGTGCAATCTTTGGTGCTATTGCTATTGATACCGCAAACTGCGATGCTGAAGGCAACGTTTTCTGGGGCTGTTCACGGAGCTAA 2931 0.4231 MLCSCLFFQQEIYVQPLEILSLASVLLLSEKRCALLSLFGCFVLWVGSVIFALGVKMVATSCTNLLDLVSGDILNFPQTPRALPRVNTVPGVISDIDGKKGTGDDDSQASSSEHRQKIIIVANFLPLNAHKDKDSGRWCFSYDEDSILWQLKDAISFDTDVVYVGSLKVDVDESEQERVSQELLDEFKCWPTFLPPLIQNRFYNGFCKQHLWPLFHYMLPMFPDHGNRFDRVLWQAYVAANRIFANRVLEVTNPEVDFVWVHDYHLMVLPTFLRKGYSKVKLGFFLHSPFPSSEIYRSLPVRDEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYYGRTVYIKILPVGIHMARLQSAINHPSSTDKVQELYEQFMGKQLILGVDDMDIFKGVSLKLLAVELLLEQNPELLGELVLVQIVNPPKSSGKGVEEAKEIHHIADRINERFSWLNYEPVIIIDHPVSFYEKIAYYSLAECCIVNAVRDGMNLIPYEYIVCRQGNTQMDQALGIVSELPRTSPLVVSEFIGCSPSLSGALRVNPWDISAVADAINLAISMSIVEKQLRHEKHYRYVSSHDMGYWARSFVQDLVRSCQDHLSKRCWGIGFGLSFRILALSPSFRKLSIGHIVSAYKRSNQRAIFLDYDGTLVSQTSIVKSPSPEVISLLNNLCSDPNNIVFIVSGRGRLSLGEWLNQCENLGIAAEHGYFIRWDVQSSWETNYIATDFAWKSIVEPVMRAYTESTDGSQMEIKESALVWHHRDADLDFGSWQAKSLLDHLENVLSNDPVVVKKGQYIVEVKPQGITKGLATASRLKPVCDDEEEDPSERAEAGSVTLYLQDHWPSFKSIGLLRRAMTHASFSEENNRALSILGANVIETAVSSHSLSKDIDISPKDLNRRIAEFFNVESSCTGDALRLGLQKVVRVPPKTNSSAPSAVCGAFRAIFGAIAIDTANCDAEGNVFWGCSRS 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1802 976 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 110 369 - -
Lele21g1802 976 SUPERFAMILY RNase III domain-like 851 959 IPR036389 GO:0004525|GO:0006396
Lele21g1802 976 Pfam Glycosyltransferase family 20 117 600 IPR001830 GO:0003824|GO:0005992
Lele21g1802 976 ProSiteProfiles Ribonuclease III family domain profile. 842 961 IPR000999 GO:0004525|GO:0006396
Lele21g1802 976 Pfam Trehalose-phosphatase 651 819 IPR003337 GO:0003824|GO:0005992
Lele21g1802 976 FunFam Alpha,alpha-trehalose-phosphate synthase 371 585 - -
Lele21g1802 976 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 84 822 IPR001830 GO:0003824|GO:0005992
Lele21g1802 976 SUPERFAMILY HAD-like 648 817 IPR036412 -
Lele21g1802 976 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 117 603 - -
Lele21g1802 976 TIGRFAM T6PP: trehalose-phosphatase 646 848 IPR003337 GO:0003824|GO:0005992
Lele21g1802 976 CDD GT20_TPS 117 600 IPR001830 GO:0003824|GO:0005992
Lele21g1802 976 Gene3D Glycogen Phosphorylase B; 371 585 - -
Lele21g1802 976 Gene3D - 650 819 IPR023214 -
Lele21g1802 976 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 647 764 - -
Lele21g1802 976 Pfam Ribonuclease-III-like 858 962 IPR000999 GO:0004525|GO:0006396
Lele21g1802 976 SMART riboneu5 857 970 IPR000999 GO:0004525|GO:0006396
Lele21g1802 976 Gene3D - 731 810 - -
Lele21g1802 976 Gene3D Ribonuclease III domain 851 970 IPR036389 GO:0004525|GO:0006396
Lele21g1802 976 FunFam Trehalose-6-phosphate synthase 2 731 810 - -
Lele21g1802 976 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 649 819 IPR006379 -
Lele21g1802 976 Gene3D Glycogen Phosphorylase B; 108 370 - -
Lele21g1802 976 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 777 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1802 Lele-ChrLele21 25662794 25669459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1802 57 828 Trehalose Biosynthesis Gene Families AT1G23870 66.882 0.0 1117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1802 21 25662794 25669459 Lele21g1802 21 25662794 25669459 ECH
Lele21g1802 21 25662794 25669459 Lele23g0205 23 1355113 1359851 hybridization
Lele21g1802 21 25662794 25669459 Lele24g1738 24 22635085 22640197 hybridization