Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1801 ATGGTTCACGTATCTTTCTACCGCAACTATGGGAAAACATTCAAGAAGCCTCGTCGTCCGTATGAGAAGGAGCGTTTGGATGCTGAGTTGAAGCTCGTGGGAGAGTATGGGCTTCGCTGCAAAAGGGAGCTGTGGAGGGTTCAGTACGCTCTGAGTCGTATCCGTAATAACGCAAGGGAGCTTTTGACCCTTGATGAGAAGAACCCACGTCGGATCTTCGAGGGTGACGCTCTTTTGCGTCGAATGTTTCGATATGGGCTTTTAGATGAGAGTCAGAATAAGCTCGATTACGTCTTGGCTTTGACCATTGAGAACTTCCTTGAGCGTCGTCTTCAGACACTTGTGTTCAAATCAGGGATGGCCAAGTCAATTCATCATGCTAGGGTCCTCATCAGGCAGAGGCATATCAGGGTTGGGAGGCAGGTGGTGAACATCCCATCATTCATGGTGCGAGTTGATTCCCAGAAGCACATTGACTTTTCACTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGAGTGAAGAGAAGGAACCAAAGGGCTGCTGCCAAGAAGGCTGCTGGCGGAGATGGAGATGAGGAGGATGAGGAGTAA 594 0.4983 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARELLTLDEKNPRRIFEGDALLRRMFRYGLLDESQNKLDYVLALTIENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQRAAAKKAAGGDGDEEDEE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1801 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Lele21g1801 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Lele21g1801 197 Gene3D - 108 164 IPR036986 GO:0003723
Lele21g1801 197 MobiDBLite consensus disorder prediction 165 197 - -
Lele21g1801 197 SMART s4_6 109 180 IPR002942 GO:0003723
Lele21g1801 197 CDD S4 109 153 - -
Lele21g1801 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Lele21g1801 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Lele21g1801 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Lele21g1801 197 FunFam 40S ribosomal protein S9 108 188 - -
Lele21g1801 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Lele21g1801 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Lele21g1801 197 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1801 Lele-ChrLele21 25654723 25656356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1801 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 4.58e-128 357