LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1797	ATGAAGGAGGTGAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATAGATGAACAGCTGGAGAGGCATCTGAACAAGGCATTGACTTTGGAGAAGCACAAGACGAAAGACGAAGATGTGCCGGCGACTAACATCGGCGTTACTTCCATTAGAAGTCTAAGTGGTGGTGGCGGAGCTACCTTCAACAGGCAGAGACAGGAGTGGGAGATTGACCCTTCCAAGCTAATCATCAAGAGTGTTATAGCTCGCGGGACCTTCGGCACCGTTCATCGTAGTATCTATGACGGCCAAGATGTCGCCGTTAAAATGTTGGATTGGGGCGAAGAAGGCCACAGGACAGATGCTGAAATTGCTTCATTAAGGGCAGCATTTACACAAGAAGTTGCCGTTTGGCATAAACTTGATCATCCTAATGTCACTAAGTTTATAGGCGCAACAACAGGGTTGTCAGAGTTACAGATACAAACTGAAAATGGTCTAATTACCATGCCAGGCAATGCCTGTTGCGTTGTTGTGGAGTATCTTCCCGGTGGTCTAAAAACTTTCCTAATAAAAAACAGGAGAAAGAAATTACCATTCAAGGCTGTCATCCAGCTGGCTCTTGATCTTGCAAGAGGGCTGAGTTATCTCCACTCTCAAAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGCTGCTCGACAAGAAAGGCACAATCAAAATTGCTGATTTTGGGGTTGCACGTGTTGAGGCTTCGAATCCTAATGACATGACCGGGGAAACTGGTACTCTTGGATACATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTGTGGGAGATATATTGTTGCGACATGCCATATCCAGACCTAAGTTTTGCAGAGGTTACTGCAGCTGTTGTTCGCCAGAACCTGAGACCTGAAATACCAAGATGCTGCCCCAGTTCTCTAGCAAATGTGATGAAGAGATGTTGGGATGCCCACCCTGATAAGCGACCGGAGATGGACGAGGTAGTTTCCATGTTAGAGGCCATTGACACATCAAAAGGTGGAGGTATGATCCCTCTTGATCAGCAACAAGGTTGTCTTTGCTTCCGCAAGAAAAGAGGGCCTTAA	1143	0.4602	MKEVSDGFVRADQIDLKSIDEQLERHLNKALTLEKHKTKDEDVPATNIGVTSIRSLSGGGGATFNRQRQEWEIDPSKLIIKSVIARGTFGTVHRSIYDGQDVAVKMLDWGEEGHRTDAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATTGLSELQIQTENGLITMPGNACCVVVEYLPGGLKTFLIKNRRKKLPFKAVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKKGTIKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFAEVTAAVVRQNLRPEIPRCCPSSLANVMKRCWDAHPDKRPEMDEVVSMLEAIDTSKGGGMIPLDQQQGCLCFRKKRGP	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1797	380	FunFam	Serine/threonine-protein kinase HT1	178	362	-	-
	Lele21g1797	380	ProSiteProfiles	Protein kinase domain profile.	78	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g1797	380	Gene3D	Transferase(Phosphotransferase) domain 1	179	370	-	-
	Lele21g1797	380	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	65	354	-	-
	Lele21g1797	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	218	230	IPR008271	GO:0004672\|GO:0006468
	Lele21g1797	380	Coils	Coil	16	36	-	-
	Lele21g1797	380	SMART	serkin_6	78	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g1797	380	FunFam	Kinase suppressor of Ras 1	67	162	-	-
	Lele21g1797	380	SUPERFAMILY	Protein kinase-like (PK-like)	65	351	IPR011009	-
	Lele21g1797	380	CDD	STKc_MAP3K-like	84	351	-	-
	Lele21g1797	380	Pfam	Protein tyrosine and serine/threonine kinase	80	351	IPR001245	GO:0004672\|GO:0006468
	Lele21g1797	380	Gene3D	Phosphorylase Kinase; domain 1	66	161	-	-
	Lele21g1797	380	PRINTS	Tyrosine kinase catalytic domain signature	212	230	IPR001245	GO:0004672\|GO:0006468
	Lele21g1797	380	PRINTS	Tyrosine kinase catalytic domain signature	278	300	IPR001245	GO:0004672\|GO:0006468
	Lele21g1797	380	PRINTS	Tyrosine kinase catalytic domain signature	322	344	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1797	Lele-ChrLele21	25632238	25634914	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1797	1	312	MAP Kinase Kinase Kinase	AT5G50000	81.073	0.0	528

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Lele21g1797		PK_Tyr_Ser-Thr	7.5e-61	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1797	21	25632238	25634914	Lele22g1773	22	22950820	22953423	ECH
	Lele21g1797	21	25632238	25634914	Lele21g1797	21	25632238	25634914	ECH
	Lele21g1797	21	25632238	25634914	Lele24g1733	24	22597399	22600001	hybridization